lineage | Count |
---|---|
lineage2.2.2 | 2 |
lineage2.2.1 | 13 |
lineage4.9 | 19 |
lineage4.5;lineage2.2.1 | 1 |
lineage4.4.1.1 | 3 |
lineage4.6.5 | 1 |
lineage3.1.1 | 1 |
5 | |
lineage4.1.2.1 | 2 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
La1.6 | 1 |
lineage4.2.1 | 1 |
lineage4.4 | 1 |
lineage4.8 | 17 |
lineage3 | 8 |
lineage4.1.2 | 2 |
lineage3.1 | 1 |
lineage4.5 | 1 |
lineage4.6.2.2 | 1 |
lineage4.3.4.2 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage1.1.1.1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.2.2.2 | 1 |
lineage4.3.2.1 | 3 |
lineage4.3.3 | 1 |
La1.8.1 | 3 |
lineage4.6.1.1 | 1 |
lineage4.7 | 1 |
lineage4.4.1.2 | 1 |
lineage4.9;La1.3 | 1 |
spoligotype | Count |
---|---|
None | 101 |
ID | Drug resistance | Lineage | Country iso2 | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | SRR1140736 | RR-TB | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173310 | MDR-TB | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4814496 | RR-TB | lineage4.1.2 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR2229234 | RR-TB | lineage4.8 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4815079 | RR-TB | lineage3 | None | ERR4817069 | RR-TB | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816604 | RR-TB | lineage4.1.2 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR4816756 | RR-TB | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR2513231 | RR-TB | lineage4.3.4.2 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR2509886 | RR-TB | lineage3 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4820266 | RR-TB | lineage3 | None | ERR4817584 | MDR-TB | lineage3 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4820746 | RR-TB | lineage3 | None | ERR2513830 | RR-TB | lineage4.8 | None | ERR2513924 | RR-TB | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2514197 | RR-TB | lineage1.1.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4821007 | RR-TB | lineage1.2.2.2 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | ERR4828879 | MDR-TB | lineage3 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | SRR6896171 | RR-TB | lineage4.3.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | SRR6896288 | RR-TB | lineage4.3.2.1 | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6896396 | MDR-TB | lineage4.3.2.1 | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR6982257 | RR-TB | lineage4.1.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4188222 | MDR-TB | La1.8.1 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None |
---|