EBG00000313339 - n.2103C>T
Drug resistance types
5 Sensitive
10 RR-TB
31 HR-TB
21 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
76 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 10 |
| lineage4.2.1 | 1 |
| lineage2.2.1 | 12 |
| lineage4.9 | 16 |
| lineage4.3.4.2 | 5 |
| lineage4.8 | 11 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4 | 5 |
| lineage2.2.1.1 | 2 |
| lineage4.1.1 | 2 |
| 21 | |
| lineage4.1.2.1 | 8 |
| lineage4.6.1.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2 | 2 |
| lineage4.3.2 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.3.3 | 5 |
| lineage1.2.1.2.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.1.1.3 | 4 |
| lineage6.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.5 | 1 |
| lineage4.4 | 1 |
| lineage4.7 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.8.1 | 7 |
| lineage4.6.1.2;lineage4.3.3 | 1 |
| La1 | 1 |
| lineage6.1.1 | 2 |
| La1.2 | 1 |
| lineage3.1.1 | 2 |
| lineage4.4.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.6 | 1 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 153 |
Geographic prevalence
Country level data for this variant is available for 24 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18913779 | Other | lineage3 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19304109 | Other | lineage4.8 | None | SRR19304083 | Other | lineage4.4.1.1 | None | SRR19304104 | Other | lineage4.8 | None | ERR4815680 | Other | lineage1.1.2 | gb | SRR22424765 | MDR-TB | lineage4 | None | ERR4815204 | Other | lineage2.2.1.1 | gb | SRR3675474 | Other | lineage4.1.1 | None | SRR3675488 | HR-TB | None | SRR3675265 | Other | lineage4 | None | SRR3675222 | Other | None | SRR3675245 | Other | lineage4.1.2.1 | None | ERR4816300 | Other | lineage4.1.2.1 | None | ERR176740 | HR-TB | None | SRR3675282 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR4815065 | Other | lineage4.1.2.1 | gb | ERR4817131 | Pre-XDR-TB | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR2513392 | Other | lineage4.3.2.1 | gb | ERR4817730 | Other | lineage4.2.1.1 | gb | ERR4816656 | HR-TB | None | ERR4818065 | Other | lineage4.1.2.1 | None | ERR2513401 | HR-TB | lineage3 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4818853 | Other | lineage4.1.2 | gb | ERR4818272 | Other | lineage4.3.2 | None | ERR4818498 | Other | lineage3.1.2.1 | gb | ERR4818929 | HR-TB | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4820275 | HR-TB | lineage4.4.1.2 | gb | ERR4819093 | Other | lineage4.3.3 | None | ERR2513619 | Other | lineage4.8 | gb | ERR4819206 | Other | lineage4.8 | None | ERR4819630 | Other | lineage4.8 | gb | ERR2514394 | Other | lineage4.3.4.2 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820846 | RR-TB | lineage4.6.2.2 | gb | ERR4819980 | Other | lineage4.1.2.1 | None | ERR4820026 | Other | lineage3 | None | ERR4819950 | RR-TB | lineage4.1.1.3 | gb | ERR4821127 | HR-TB | lineage4.6.2.2 | gb | SRR5341470 | HR-TB | None | SRR6045496 | Other | lineage6.1.3 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4822033 | Other | lineage3 | None | SRR6045519 | HR-TB | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | ERR4822169 | Other | lineage4.1.1.3 | gb | ERR4822176 | Other | lineage4.1.1.2 | None | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821718 | Other | lineage4.2.2.2 | gb | ERR4821607 | Sensitive | lineage4.5 | gb | SRR5818388 | Other | lineage4.9 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045952 | HR-TB | None | SRR5818690 | Other | lineage4.2.2.2 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045909 | Other | lineage4.8 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045295 | Other | lineage4.7 | None | ERR4829010 | MDR-TB | lineage2.2.1 | it | SRR6045384 | Other | lineage4.1.2 | None | SRR6046250 | Other | lineage4.9 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6046729 | Other | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR7131061 | Other | lineage2.2.1 | None | ERR3275996 | HR-TB | lineage4.3.4.1 | nl | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131109 | Pre-XDR-TB | lineage4.8 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131198 | Other | lineage4.3.3 | None | SRR7131161 | Other | lineage4.8 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR323039 | HR-TB | None | SRR7131233 | MDR-TB | lineage4.3.3 | None | ERR1034652 | Other | None | ERR323053 | HR-TB | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR10796590 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR1213919 | MDR-TB | lineage4.3 | None | ERR10796592 | Other | lineage4 | None | ERR1213875 | Other | lineage4.3.3 | de | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR3439489 | RR-TB | La1.8.1 | None | ERR1213930 | Other | lineage4.3.2 | pe | ERR1213931 | MDR-TB | lineage4.6.1.2;lineage4.3.3 | pe | ERR1213928 | MDR-TB | lineage4.3.3 | pe | ERR3283010 | Other | La1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3797022 | Other | La1.8.1 | None | ERR3797015 | HR-TB | None | ERR3797019 | Other | La1.8.1 | None | ERR3797060 | Other | La1.8.1 | None | ERR4188253 | Other | La1.8.1 | None | ERR4188124 | Other | La1.8.1 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4772225 | Other | La1.2 | None | ERR4188247 | HR-TB | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR4798504 | Other | lineage3 | None | ERR736865 | HR-TB | None | ERR4811101 | Other | lineage4.4.2 | None | ERR5979407 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR6197042 | RR-TB | lineage4.9 | None | ERR970441 | RR-TB | lineage2.2.1.1 | None | ERR9117704 | Other | lineage4.6 | None | ERR9117729 | Other | lineage3 | None | ERR9117794 | Sensitive | lineage3 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR970445 | MDR-TB | lineage2.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987722 | HR-TB | None | SRR11349207 | RR-TB | lineage2.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR10315715 | MDR-TB | lineage4.4.1.1.1 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | SRR10315640 | MDR-TB | lineage4.8 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1172310 | HR-TB | None | SRR11972417 | MDR-TB | lineage2.2.1 | None |
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