Run ID: SRR1172146
Sample name:
Date: 03-04-2023 02:57:50
Number of reads: 27443
Percentage reads mapped: 16.55
Strain: lineage4.9
Drug-resistance: Sensitive
| Drug | Resistance | Supporting mutations |
|---|
| Lineage | Family | Main Spoligotype | RDs | Frequency |
|---|---|---|---|---|
| lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
| lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
| Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
|---|
| Gene | Chromosome position | Mutation | Type | Estimated fraction |
|---|---|---|---|---|
| gyrB | 6115 | c.876A>G | synonymous_variant | 1.0 |
| gyrB | 6172 | c.933C>T | synonymous_variant | 1.0 |
| gyrB | 6190 | c.951A>G | synonymous_variant | 1.0 |
| gyrB | 6214 | c.975G>C | synonymous_variant | 1.0 |
| gyrB | 6238 | c.999G>A | synonymous_variant | 1.0 |
| gyrB | 6242 | p.Arg335Lys | missense_variant | 1.0 |
| gyrB | 6253 | c.1014G>C | synonymous_variant | 1.0 |
| gyrB | 6265 | c.1026C>T | synonymous_variant | 1.0 |
| gyrB | 6280 | c.1041T>C | synonymous_variant | 1.0 |
| gyrB | 6286 | c.1047T>C | synonymous_variant | 1.0 |
| gyrB | 6292 | c.1053G>A | synonymous_variant | 1.0 |
| gyrB | 6298 | c.1059C>G | synonymous_variant | 1.0 |
| gyrB | 6299 | c.1060C>T | synonymous_variant | 1.0 |
| gyrA | 6307 | c.-995T>G | upstream_gene_variant | 1.0 |
| gyrA | 6316 | c.-986G>C | upstream_gene_variant | 1.0 |
| gyrB | 6326 | p.Ser363Ala | missense_variant | 1.0 |
| gyrA | 6331 | c.-971A>G | upstream_gene_variant | 1.0 |
| gyrA | 6673 | c.-629A>C | upstream_gene_variant | 0.67 |
| gyrA | 6674 | c.-628_-626delCTTinsTTG | upstream_gene_variant | 0.67 |
| gyrA | 6700 | c.-602T>C | upstream_gene_variant | 0.8 |
| gyrA | 6703 | c.-599G>C | upstream_gene_variant | 0.8 |
| gyrA | 6706 | c.-596G>A | upstream_gene_variant | 0.8 |
| gyrA | 6709 | c.-593A>G | upstream_gene_variant | 0.8 |
| gyrA | 6712 | c.-590G>C | upstream_gene_variant | 0.8 |
| gyrA | 6730 | c.-572A>G | upstream_gene_variant | 1.0 |
| gyrA | 6733 | c.-569G>A | upstream_gene_variant | 1.0 |
| gyrA | 6745 | c.-557T>C | upstream_gene_variant | 1.0 |
| gyrA | 6751 | c.-551G>C | upstream_gene_variant | 1.0 |
| gyrA | 6760 | c.-542G>C | upstream_gene_variant | 1.0 |
| gyrA | 7349 | c.48A>G | synonymous_variant | 1.0 |
| gyrA | 7361 | c.60C>T | synonymous_variant | 1.0 |
| gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
| gyrA | 7391 | c.90C>T | synonymous_variant | 1.0 |
| gyrA | 7394 | c.93T>C | synonymous_variant | 1.0 |
| gyrA | 7412 | c.111C>G | synonymous_variant | 1.0 |
| gyrA | 7422 | c.121C>T | synonymous_variant | 0.75 |
| gyrA | 7433 | c.132G>C | synonymous_variant | 1.0 |
| gyrA | 7457 | c.156T>C | synonymous_variant | 1.0 |
| gyrA | 7601 | c.300C>G | synonymous_variant | 1.0 |
| gyrA | 7626 | c.325C>T | synonymous_variant | 1.0 |
| gyrA | 7631 | c.330G>C | synonymous_variant | 1.0 |
| gyrA | 7643 | c.342C>T | synonymous_variant | 1.0 |
| gyrA | 7646 | c.345C>T | synonymous_variant | 1.0 |
| gyrA | 7655 | c.354G>C | synonymous_variant | 1.0 |
| gyrA | 7658 | c.357A>G | synonymous_variant | 1.0 |
| gyrA | 7661 | c.360C>T | synonymous_variant | 1.0 |
| gyrA | 7664 | c.363T>C | synonymous_variant | 1.0 |
| gyrA | 7670 | c.369A>G | synonymous_variant | 1.0 |
| gyrA | 7676 | c.375G>C | synonymous_variant | 1.0 |
| gyrA | 7679 | c.378G>C | synonymous_variant | 1.0 |
| gyrA | 7697 | c.396C>G | synonymous_variant | 1.0 |
| gyrA | 7725 | c.424C>T | synonymous_variant | 1.0 |
| gyrA | 7728 | c.427_429delAGGinsCGC | synonymous_variant | 1.0 |
| gyrA | 7763 | c.462T>C | synonymous_variant | 1.0 |
| gyrA | 7769 | c.468C>T | synonymous_variant | 1.0 |
| gyrA | 7787 | c.486G>A | synonymous_variant | 1.0 |
| gyrA | 7793 | c.492G>A | synonymous_variant | 1.0 |
| gyrA | 7832 | c.531G>T | synonymous_variant | 1.0 |
| gyrA | 7835 | c.534A>G | synonymous_variant | 1.0 |
| gyrA | 7859 | c.558A>C | synonymous_variant | 1.0 |
| gyrA | 7865 | c.564T>C | synonymous_variant | 1.0 |
| gyrA | 7868 | c.567C>T | synonymous_variant | 1.0 |
| gyrA | 7883 | c.582G>C | synonymous_variant | 1.0 |
| gyrA | 7884 | p.Arg195Gly | missense_variant | 1.0 |
| gyrA | 7892 | c.591G>C | synonymous_variant | 1.0 |
| gyrA | 7898 | p.Asp199Glu | missense_variant | 1.0 |
| gyrA | 7901 | c.600G>T | synonymous_variant | 1.0 |
| gyrA | 7904 | c.603G>C | synonymous_variant | 1.0 |
| gyrA | 8267 | c.966G>C | synonymous_variant | 1.0 |
| gyrA | 8270 | c.969G>C | synonymous_variant | 1.0 |
| gyrA | 8283 | p.Ile328Leu | missense_variant | 1.0 |
| gyrA | 8288 | c.987T>C | synonymous_variant | 1.0 |
| gyrA | 8294 | c.993T>C | synonymous_variant | 1.0 |
| gyrA | 8324 | c.1023T>C | synonymous_variant | 1.0 |
| gyrA | 8339 | c.1038A>G | synonymous_variant | 1.0 |
| gyrA | 8340 | p.Ala347Ser | missense_variant | 1.0 |
| gyrA | 8360 | c.1059G>A | synonymous_variant | 1.0 |
| gyrA | 8372 | c.1071G>T | synonymous_variant | 1.0 |
| gyrA | 8375 | c.1074G>C | synonymous_variant | 1.0 |
| gyrA | 8382 | p.Leu361Met | missense_variant | 1.0 |
| mshA | 575704 | c.357T>C | synonymous_variant | 1.0 |
| mshA | 575705 | c.358T>C | synonymous_variant | 1.0 |
| mshA | 575734 | c.387T>G | synonymous_variant | 1.0 |
| mshA | 575746 | c.399C>G | synonymous_variant | 0.75 |
| mshA | 575767 | c.420G>A | synonymous_variant | 1.0 |
| mshA | 575771 | p.Val142Ser | missense_variant | 1.0 |
| mshA | 575779 | p.Glu144Asp | missense_variant | 1.0 |
| mshA | 575780 | p.Pro145Ala | missense_variant | 1.0 |
| mshA | 575821 | c.474G>C | synonymous_variant | 1.0 |
| mshA | 575824 | c.477T>G | synonymous_variant | 1.0 |
| mshA | 575842 | c.495G>C | synonymous_variant | 1.0 |
| mshA | 575845 | c.498C>G | synonymous_variant | 1.0 |
| mshA | 575848 | c.501C>T | synonymous_variant | 1.0 |
| mshA | 575851 | c.504C>G | synonymous_variant | 1.0 |
| mshA | 575864 | c.517T>C | synonymous_variant | 1.0 |
| ccsA | 620721 | c.831G>A | synonymous_variant | 0.67 |
| ccsA | 620733 | c.843G>C | synonymous_variant | 0.67 |
| ccsA | 620739 | c.849A>G | synonymous_variant | 0.67 |
| ccsA | 620742 | c.852G>C | synonymous_variant | 0.67 |
| ccsA | 620748 | c.858T>C | synonymous_variant | 0.67 |
| ccsA | 620778 | c.888T>C | synonymous_variant | 1.0 |
| ccsA | 620781 | c.891C>G | synonymous_variant | 1.0 |
| ccsA | 620783 | p.Ala298Val | missense_variant | 1.0 |
| ccsA | 620787 | c.897C>A | synonymous_variant | 1.0 |
| ccsA | 620796 | c.906C>G | synonymous_variant | 1.0 |
| rpoB | 760070 | c.264T>G | synonymous_variant | 1.0 |
| rpoB | 760091 | c.285G>C | synonymous_variant | 1.0 |
| rpoB | 760101 | c.295T>C | synonymous_variant | 1.0 |
| rpoB | 760109 | c.303C>T | synonymous_variant | 1.0 |
| rpoB | 760112 | c.306T>C | synonymous_variant | 1.0 |
| rpoB | 760118 | c.312T>C | synonymous_variant | 1.0 |
| rpoB | 760121 | c.315T>C | synonymous_variant | 1.0 |
| rpoB | 760130 | p.Asp108Glu | missense_variant | 1.0 |
| rpoB | 760139 | c.333A>G | synonymous_variant | 1.0 |
| rpoB | 760142 | c.336C>G | synonymous_variant | 1.0 |
| rpoB | 760145 | c.339C>G | synonymous_variant | 1.0 |
| rpoB | 760181 | c.375T>A | synonymous_variant | 1.0 |
| rpoB | 760184 | c.378A>G | synonymous_variant | 1.0 |
| rpoB | 760196 | c.390C>G | synonymous_variant | 1.0 |
| rpoB | 760235 | c.429T>C | synonymous_variant | 1.0 |
| rpoB | 760244 | c.438G>C | synonymous_variant | 1.0 |
| rpoB | 760274 | c.468G>A | synonymous_variant | 1.0 |
| rpoB | 760295 | c.489C>T | synonymous_variant | 1.0 |
| rpoB | 760307 | c.501T>C | synonymous_variant | 1.0 |
| rpoB | 760310 | c.504G>C | synonymous_variant | 1.0 |
| rpoB | 760328 | c.522G>C | synonymous_variant | 1.0 |
| rpoB | 760331 | c.525G>C | synonymous_variant | 1.0 |
| rpoB | 760337 | c.531C>G | synonymous_variant | 0.8 |
| rpoB | 760340 | c.534G>T | synonymous_variant | 1.0 |
| rpoB | 760358 | c.552C>G | synonymous_variant | 1.0 |
| rpoB | 760361 | c.555T>C | synonymous_variant | 1.0 |
| rpoB | 760370 | c.564C>G | synonymous_variant | 1.0 |
| rpoB | 760376 | p.Asp190Glu | missense_variant | 1.0 |
| rpoB | 760380 | p.Thr192Leu | missense_variant | 1.0 |
| rpoB | 760403 | c.597C>T | synonymous_variant | 1.0 |
| rpoB | 760412 | c.606C>T | synonymous_variant | 1.0 |
| rpoB | 760418 | c.612G>C | synonymous_variant | 1.0 |
| rpoB | 760424 | c.618C>G | synonymous_variant | 1.0 |
| rpoB | 760916 | c.1110C>G | synonymous_variant | 1.0 |
| rpoB | 760919 | c.1113C>G | synonymous_variant | 1.0 |
| rpoB | 760925 | c.1119T>C | synonymous_variant | 1.0 |
| rpoB | 760928 | c.1122G>C | synonymous_variant | 1.0 |
| rpoB | 760931 | c.1125C>G | synonymous_variant | 1.0 |
| rpoB | 760937 | c.1131G>A | synonymous_variant | 1.0 |
| rpoB | 760946 | c.1140A>G | synonymous_variant | 1.0 |
| rpoB | 760973 | c.1167G>C | synonymous_variant | 1.0 |
| rpoB | 760991 | c.1185G>T | synonymous_variant | 1.0 |
| rpoB | 761051 | c.1245G>T | synonymous_variant | 1.0 |
| rpoB | 761057 | c.1251G>C | synonymous_variant | 1.0 |
| rpoB | 761060 | c.1254C>G | synonymous_variant | 1.0 |
| rpoB | 761063 | c.1257C>G | synonymous_variant | 1.0 |
| rpoB | 761132 | c.1326G>T | synonymous_variant | 1.0 |
| rpoB | 761133 | c.1327_1329delTTGinsCTC | synonymous_variant | 1.0 |
| rpoB | 761189 | c.1383T>G | synonymous_variant | 1.0 |
| rpoB | 761192 | c.1386C>G | synonymous_variant | 1.0 |
| rpoB | 761195 | c.1389G>C | synonymous_variant | 1.0 |
| rpoB | 761198 | c.1392G>C | synonymous_variant | 1.0 |
| rpoB | 761492 | c.1686G>C | synonymous_variant | 1.0 |
| rpoB | 761504 | c.1698C>G | synonymous_variant | 1.0 |
| rpoB | 761510 | c.1704T>C | synonymous_variant | 1.0 |
| rpoB | 761531 | c.1725C>G | synonymous_variant | 1.0 |
| rpoB | 761537 | c.1731C>G | synonymous_variant | 1.0 |
| rpoB | 761558 | c.1752C>G | synonymous_variant | 1.0 |
| rpoB | 761570 | c.1764T>C | synonymous_variant | 0.8 |
| rpoB | 761573 | c.1767C>G | synonymous_variant | 1.0 |
| rpoB | 761579 | c.1773G>C | synonymous_variant | 1.0 |
| rpoB | 761606 | c.1800C>G | synonymous_variant | 1.0 |
| rpoB | 761612 | c.1806G>T | synonymous_variant | 1.0 |
| rpoB | 761615 | c.1809A>C | synonymous_variant | 1.0 |
| rpoB | 761636 | c.1830G>T | synonymous_variant | 1.0 |
| rpoB | 761642 | c.1836G>T | synonymous_variant | 0.67 |
| rpoB | 761645 | c.1839C>A | synonymous_variant | 1.0 |
| rpoB | 761648 | c.1842T>C | synonymous_variant | 1.0 |
| rpoB | 761666 | c.1860G>C | synonymous_variant | 1.0 |
| rpoB | 762233 | c.2427G>T | synonymous_variant | 1.0 |
| rpoB | 762254 | c.2448T>G | synonymous_variant | 1.0 |
| rpoB | 762257 | c.2451C>G | synonymous_variant | 1.0 |
| rpoB | 762266 | c.2460T>C | synonymous_variant | 1.0 |
| rpoB | 762281 | c.2475G>A | synonymous_variant | 1.0 |
| rpoB | 762284 | c.2478G>C | synonymous_variant | 1.0 |
| rpoB | 762293 | c.2487T>C | synonymous_variant | 1.0 |
| rpoC | 762431 | c.-939C>T | upstream_gene_variant | 1.0 |
| rpoC | 762470 | c.-900G>C | upstream_gene_variant | 1.0 |
| rpoC | 762491 | c.-879T>C | upstream_gene_variant | 1.0 |
| rpoC | 762509 | c.-861T>G | upstream_gene_variant | 1.0 |
| rpoB | 762510 | p.Ala902Pro | missense_variant | 1.0 |
| rpoC | 762857 | c.-513C>G | upstream_gene_variant | 0.67 |
| rpoC | 762860 | c.-510G>C | upstream_gene_variant | 0.67 |
| rpoC | 762917 | c.-453C>T | upstream_gene_variant | 1.0 |
| rpoC | 762929 | c.-441G>T | upstream_gene_variant | 1.0 |
| rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.67 |
| rpoC | 763127 | c.-243G>C | upstream_gene_variant | 0.5 |
| rpoC | 763166 | c.-204A>G | upstream_gene_variant | 0.75 |
| rpoC | 763169 | c.-201A>G | upstream_gene_variant | 0.75 |
| rpoC | 763202 | c.-168A>C | upstream_gene_variant | 1.0 |
| rpoC | 763205 | c.-165G>T | upstream_gene_variant | 1.0 |
| rpoC | 763206 | c.-164_-162delAGTinsTCC | upstream_gene_variant | 1.0 |
| rpoC | 763226 | c.-144A>G | upstream_gene_variant | 1.0 |
| rpoC | 763238 | c.-132T>C | upstream_gene_variant | 1.0 |
| rpoC | 763402 | c.33C>T | synonymous_variant | 0.8 |
| rpoC | 763409 | c.40_42delCTTinsTTG | synonymous_variant | 0.8 |
| rpoC | 763414 | c.45T>G | synonymous_variant | 0.8 |
| rpoC | 763441 | c.72C>T | synonymous_variant | 0.8 |
| rpoC | 763444 | c.75T>C | synonymous_variant | 0.83 |
| rpoC | 763456 | c.87A>G | synonymous_variant | 0.8 |
| rpoC | 763486 | c.117T>G | synonymous_variant | 0.67 |
| rpoC | 763528 | c.159G>A | synonymous_variant | 1.0 |
| rpoC | 763594 | c.225C>T | synonymous_variant | 1.0 |
| rpoC | 763603 | c.234C>T | synonymous_variant | 1.0 |
| rpoC | 763618 | c.249C>T | synonymous_variant | 1.0 |
| rpoC | 763636 | c.267T>C | synonymous_variant | 1.0 |
| rpoC | 763660 | c.291T>G | synonymous_variant | 0.67 |
| rpoC | 763669 | c.300C>G | synonymous_variant | 0.67 |
| rpoC | 763675 | c.306C>G | synonymous_variant | 0.67 |
| rpoC | 763836 | p.Ala156Val | missense_variant | 1.0 |
| rpoC | 763851 | p.Ala161Gly | missense_variant | 1.0 |
| rpoC | 763855 | c.486C>T | synonymous_variant | 1.0 |
| rpoC | 763858 | c.489A>G | synonymous_variant | 1.0 |
| rpoC | 763872 | p.Gly168Ala | missense_variant | 1.0 |
| rpoC | 763876 | p.Glu169Asp | missense_variant | 1.0 |
| rpoC | 763879 | c.510A>G | synonymous_variant | 1.0 |
| rpoC | 763888 | c.519G>C | synonymous_variant | 1.0 |
| rpoC | 763891 | c.522G>C | synonymous_variant | 1.0 |
| rpoC | 763894 | c.525A>G | synonymous_variant | 1.0 |
| rpoC | 763996 | c.627T>C | synonymous_variant | 1.0 |
| rpoC | 764005 | c.636G>C | synonymous_variant | 1.0 |
| rpoC | 764011 | c.642T>C | synonymous_variant | 1.0 |
| rpoC | 764024 | c.655T>C | synonymous_variant | 1.0 |
| rpoC | 764040 | p.Ser224Thr | missense_variant | 1.0 |
| rpoC | 764044 | c.675T>G | synonymous_variant | 1.0 |
| rpoC | 764059 | c.690G>T | synonymous_variant | 1.0 |
| rpoC | 764083 | c.714A>G | synonymous_variant | 1.0 |
| rpoC | 764140 | c.771C>T | synonymous_variant | 1.0 |
| rpoC | 764188 | c.819A>G | synonymous_variant | 1.0 |
| rpoC | 764263 | c.894G>C | synonymous_variant | 1.0 |
| rpoC | 764266 | c.897T>C | synonymous_variant | 1.0 |
| rpoC | 764278 | c.909A>G | synonymous_variant | 1.0 |
| rpoC | 764858 | c.1489T>C | synonymous_variant | 1.0 |
| rpoC | 764887 | c.1518G>C | synonymous_variant | 1.0 |
| rpoC | 764888 | c.1519_1521delTTGinsCTC | synonymous_variant | 1.0 |
| rpoC | 764896 | c.1527C>T | synonymous_variant | 1.0 |
| rpoC | 764902 | c.1533C>T | synonymous_variant | 1.0 |
| rpoC | 764911 | c.1542A>G | synonymous_variant | 1.0 |
| rpoC | 764923 | c.1554A>G | synonymous_variant | 1.0 |
| rpoC | 764932 | c.1563C>G | synonymous_variant | 1.0 |
| rpoC | 764948 | c.1579T>C | synonymous_variant | 1.0 |
| rpoC | 764968 | c.1599T>C | synonymous_variant | 1.0 |
| rpoC | 765278 | c.1909C>T | synonymous_variant | 1.0 |
| rpoC | 765283 | c.1914C>G | synonymous_variant | 1.0 |
| rpoC | 765292 | c.1923G>T | synonymous_variant | 1.0 |
| rpoC | 765300 | p.Val644Ala | missense_variant | 1.0 |
| rpoC | 765421 | c.2052C>G | synonymous_variant | 1.0 |
| rpoC | 765452 | p.Ala695Ser | missense_variant | 1.0 |
| rpoC | 765466 | c.2097C>T | synonymous_variant | 1.0 |
| rpoC | 765478 | c.2109T>C | synonymous_variant | 1.0 |
| rpoC | 765493 | c.2124G>C | synonymous_variant | 1.0 |
| rpoC | 765499 | c.2130C>G | synonymous_variant | 1.0 |
| rpoC | 765562 | c.2193G>C | synonymous_variant | 1.0 |
| rpoC | 765578 | c.2209C>T | synonymous_variant | 1.0 |
| rpoC | 765658 | c.2289C>T | synonymous_variant | 1.0 |
| rpoC | 765670 | c.2301C>T | synonymous_variant | 1.0 |
| rpoC | 765700 | c.2331T>C | synonymous_variant | 1.0 |
| rpoC | 765728 | p.Gln787Lys | missense_variant | 1.0 |
| rpoC | 765734 | c.2365T>C | synonymous_variant | 1.0 |
| rpoC | 765739 | c.2370G>C | synonymous_variant | 1.0 |
| rpoC | 765752 | p.Asp795Ser | missense_variant | 1.0 |
| rpoC | 765772 | c.2403C>G | synonymous_variant | 1.0 |
| rpoC | 765784 | c.2415C>G | synonymous_variant | 1.0 |
| rpoC | 765790 | c.2421C>T | synonymous_variant | 1.0 |
| rpoC | 765793 | c.2424C>G | synonymous_variant | 1.0 |
| rpoC | 765796 | c.2427C>T | synonymous_variant | 1.0 |
| rpoC | 765814 | c.2445A>G | synonymous_variant | 1.0 |
| rpoC | 765826 | c.2457T>C | synonymous_variant | 1.0 |
| rpoC | 765835 | c.2466C>T | synonymous_variant | 1.0 |
| rpoC | 765886 | c.2517C>G | synonymous_variant | 1.0 |
| rpoC | 765892 | c.2523T>C | synonymous_variant | 1.0 |
| rpoC | 765934 | c.2565C>T | synonymous_variant | 1.0 |
| rpoC | 765967 | c.2598C>T | synonymous_variant | 1.0 |
| rpoC | 765982 | c.2613C>G | synonymous_variant | 1.0 |
| rpoC | 765994 | c.2625A>T | synonymous_variant | 1.0 |
| rpoC | 766012 | c.2643C>G | synonymous_variant | 1.0 |
| rpoC | 766021 | c.2652G>C | synonymous_variant | 1.0 |
| rpoC | 766660 | c.3291G>A | synonymous_variant | 1.0 |
| rpoC | 766666 | c.3297C>G | synonymous_variant | 1.0 |
| rpoC | 766672 | c.3303T>C | synonymous_variant | 1.0 |
| rpoC | 766700 | c.3331C>T | synonymous_variant | 1.0 |
| rpoC | 766726 | c.3357T>C | synonymous_variant | 1.0 |
| rpoC | 766733 | c.3364C>T | synonymous_variant | 1.0 |
| rpoC | 766738 | c.3369G>C | synonymous_variant | 1.0 |
| rpoC | 766741 | c.3372G>C | synonymous_variant | 1.0 |
| rpoC | 766750 | c.3381C>G | synonymous_variant | 1.0 |
| rpoC | 766798 | c.3429C>G | synonymous_variant | 1.0 |
| rpoC | 766801 | c.3432C>G | synonymous_variant | 1.0 |
| rpoC | 766804 | c.3435A>G | synonymous_variant | 1.0 |
| rpoC | 766843 | c.3474T>G | synonymous_variant | 1.0 |
| rpoC | 766864 | c.3495G>C | synonymous_variant | 1.0 |
| rpoC | 767033 | c.3664_3666delTCGinsAGT | synonymous_variant | 1.0 |
| rpoC | 767059 | c.3690T>G | synonymous_variant | 1.0 |
| rpoC | 767062 | c.3693C>A | synonymous_variant | 1.0 |
| rpoC | 767119 | c.3750A>G | synonymous_variant | 1.0 |
| rpoC | 767134 | c.3765C>A | synonymous_variant | 1.0 |
| rpoC | 767158 | c.3789T>A | synonymous_variant | 0.75 |
| rpoC | 767167 | c.3798C>G | synonymous_variant | 1.0 |
| rpoC | 767180 | p.Ala1271Gln | missense_variant | 1.0 |
| rpoC | 767191 | c.3822C>G | synonymous_variant | 1.0 |
| rpoC | 767206 | c.3837C>G | synonymous_variant | 1.0 |
| rpoC | 767209 | c.3840T>C | synonymous_variant | 1.0 |
| rpoC | 767221 | c.3852C>G | synonymous_variant | 1.0 |
| mmpL5 | 775961 | c.2520C>G | synonymous_variant | 1.0 |
| mmpL5 | 775966 | p.Ala839Ser | missense_variant | 1.0 |
| mmpL5 | 775975 | c.2506T>C | synonymous_variant | 1.0 |
| mmpL5 | 775981 | p.Leu834Met | missense_variant | 1.0 |
| rplC | 800612 | c.-197A>G | upstream_gene_variant | 1.0 |
| rplC | 800618 | c.-191T>C | upstream_gene_variant | 1.0 |
| rplC | 800621 | c.-188G>A | upstream_gene_variant | 1.0 |
| rplC | 800627 | c.-182C>T | upstream_gene_variant | 1.0 |
| rplC | 800648 | c.-161A>G | upstream_gene_variant | 1.0 |
| rplC | 800654 | c.-155T>C | upstream_gene_variant | 1.0 |
| rplC | 800693 | c.-116A>G | upstream_gene_variant | 1.0 |
| rplC | 800703 | c.-106T>C | upstream_gene_variant | 1.0 |
| rplC | 800747 | c.-62C>G | upstream_gene_variant | 1.0 |
| rplC | 800759 | c.-50C>T | upstream_gene_variant | 1.0 |
| rplC | 800762 | c.-47T>G | upstream_gene_variant | 1.0 |
| fbiC | 1303437 | c.507C>G | synonymous_variant | 1.0 |
| fbiC | 1303449 | c.519C>T | synonymous_variant | 1.0 |
| fbiC | 1303462 | p.Ala178Ser | missense_variant | 1.0 |
| fbiC | 1303470 | c.540T>G | synonymous_variant | 1.0 |
| fbiC | 1303480 | p.Gln184Glu | missense_variant | 1.0 |
| fbiC | 1303488 | c.558G>C | synonymous_variant | 1.0 |
| fbiC | 1303512 | c.582T>C | synonymous_variant | 1.0 |
| fbiC | 1303545 | c.615A>G | synonymous_variant | 1.0 |
| fbiC | 1303575 | c.645G>C | synonymous_variant | 1.0 |
| fbiC | 1303578 | c.648G>A | synonymous_variant | 1.0 |
| fbiC | 1303584 | c.654C>G | synonymous_variant | 1.0 |
| fbiC | 1304496 | c.1566T>A | synonymous_variant | 1.0 |
| fbiC | 1304499 | c.1569T>G | synonymous_variant | 1.0 |
| fbiC | 1304502 | c.1572G>C | synonymous_variant | 1.0 |
| fbiC | 1304526 | c.1596T>G | synonymous_variant | 1.0 |
| fbiC | 1304532 | c.1602G>C | synonymous_variant | 1.0 |
| fbiC | 1304533 | c.1603T>C | synonymous_variant | 1.0 |
| fbiC | 1304541 | c.1611C>G | synonymous_variant | 1.0 |
| fbiC | 1304544 | c.1614T>C | synonymous_variant | 1.0 |
| fbiC | 1304546 | p.Val539Ala | missense_variant | 1.0 |
| fbiC | 1304559 | p.Glu543Asp | missense_variant | 1.0 |
| fbiC | 1304565 | c.1635C>G | synonymous_variant | 1.0 |
| fbiC | 1304568 | c.1638T>C | synonymous_variant | 1.0 |
| fbiC | 1304574 | c.1644C>G | synonymous_variant | 1.0 |
| fbiC | 1304580 | c.1650T>C | synonymous_variant | 1.0 |
| fbiC | 1304823 | c.1893C>T | synonymous_variant | 1.0 |
| fbiC | 1304832 | c.1902C>G | synonymous_variant | 1.0 |
| fbiC | 1304853 | c.1923C>G | synonymous_variant | 1.0 |
| fbiC | 1304856 | c.1926C>G | synonymous_variant | 1.0 |
| fbiC | 1304868 | c.1938G>C | synonymous_variant | 1.0 |
| fbiC | 1304871 | c.1941G>T | synonymous_variant | 1.0 |
| fbiC | 1304872 | c.1942_1943delAGinsTC | synonymous_variant | 1.0 |
| fbiC | 1304875 | p.Ile649Val | missense_variant | 1.0 |
| fbiC | 1304883 | c.1953G>A | synonymous_variant | 1.0 |
| fbiC | 1304893 | p.Gly655Ser | missense_variant | 1.0 |
| fbiC | 1304915 | p.Asp662Gly | missense_variant | 1.0 |
| fbiC | 1304946 | c.2016G>C | synonymous_variant | 1.0 |
| fbiC | 1304955 | c.2025G>A | synonymous_variant | 1.0 |
| fbiC | 1304958 | c.2028T>G | synonymous_variant | 1.0 |
| rrs | 1472053 | n.211_212delGC | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472446 | n.601T>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472452 | n.607G>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472686 | n.841G>A | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472847 | n.1002G>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472848 | n.1003T>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472849 | n.1004C>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472850 | n.1005T>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472857 | n.1012A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472858 | n.1013G>T | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472859 | n.1014G>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472860 | n.1015C>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472970 | n.1125C>G | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1472978 | n.1133T>C | non_coding_transcript_exon_variant | 1.0 |
| rrs | 1473288 | n.1443C>T | non_coding_transcript_exon_variant | 0.75 |
| rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.67 |
| rrs | 1473291 | n.1446G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473831 | n.174G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473887 | n.230T>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473899 | n.242A>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1473918 | n.261C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474627 | n.970G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474632 | n.975G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474717 | n.1060A>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474753 | n.1096A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474760 | n.1103A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474783 | n.1126G>A | non_coding_transcript_exon_variant | 0.75 |
| rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475013 | n.1356G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475018 | n.1361G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475027 | n.1370G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475028 | n.1371G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475401 | n.1745delC | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475404 | n.1747A>G | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475405 | n.1748A>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.75 |
| rrl | 1475453 | n.1796T>A | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475480 | n.1823A>G | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475487 | n.1830C>T | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475637 | n.1980T>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475659 | n.2002G>A | non_coding_transcript_exon_variant | 0.67 |
| rrl | 1475760 | n.2103C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476077 | n.2420T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476095 | n.2438C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476215 | n.2558C>T | non_coding_transcript_exon_variant | 1.0 |
| rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
| inhA | 1674534 | c.333G>C | synonymous_variant | 0.67 |
| inhA | 1674537 | c.336C>A | synonymous_variant | 0.67 |
| inhA | 1674540 | c.339C>T | synonymous_variant | 0.67 |
| inhA | 1674542 | p.Ala114Glu | missense_variant | 0.67 |
| inhA | 1674549 | c.348G>C | synonymous_variant | 0.67 |
| inhA | 1674555 | c.354G>A | synonymous_variant | 0.67 |
| inhA | 1674561 | c.360C>T | synonymous_variant | 0.67 |
| inhA | 1674582 | c.381T>C | synonymous_variant | 1.0 |
| inhA | 1674585 | c.384T>C | synonymous_variant | 1.0 |
| inhA | 1674588 | c.387G>A | synonymous_variant | 1.0 |
| inhA | 1674589 | p.Met130Leu | missense_variant | 1.0 |
| inhA | 1674601 | p.Leu134Val | missense_variant | 1.0 |
| inhA | 1674870 | c.669T>C | synonymous_variant | 1.0 |
| inhA | 1674876 | c.675C>G | synonymous_variant | 1.0 |
| inhA | 1674879 | c.678T>C | synonymous_variant | 1.0 |
| inhA | 1674888 | c.687C>T | synonymous_variant | 1.0 |
| inhA | 1674904 | p.Ala235Pro | missense_variant | 1.0 |
| inhA | 1674909 | c.708G>C | synonymous_variant | 1.0 |
| inhA | 1674915 | c.714C>G | synonymous_variant | 1.0 |
| inhA | 1674939 | c.738G>A | synonymous_variant | 1.0 |
| inhA | 1674942 | c.741T>C | synonymous_variant | 1.0 |
| rpsA | 1833517 | c.-24delC | upstream_gene_variant | 1.0 |
| rpsA | 1833532 | c.-10A>C | upstream_gene_variant | 1.0 |
| rpsA | 1833568 | c.27G>C | synonymous_variant | 1.0 |
| rpsA | 1833589 | c.48A>T | synonymous_variant | 1.0 |
| rpsA | 1833595 | c.54T>C | synonymous_variant | 1.0 |
| rpsA | 1833613 | c.72C>A | synonymous_variant | 1.0 |
| rpsA | 1833619 | c.78A>C | synonymous_variant | 1.0 |
| rpsA | 1833703 | c.162C>T | synonymous_variant | 0.75 |
| rpsA | 1833724 | c.183C>G | synonymous_variant | 0.8 |
| rpsA | 1833727 | c.186G>C | synonymous_variant | 0.8 |
| rpsA | 1833745 | c.204G>C | synonymous_variant | 1.0 |
| rpsA | 1833760 | c.219C>T | synonymous_variant | 1.0 |
| rpsA | 1833790 | c.249T>C | synonymous_variant | 1.0 |
| rpsA | 1833895 | c.354G>C | synonymous_variant | 0.67 |
| rpsA | 1833928 | c.387G>C | synonymous_variant | 0.75 |
| rpsA | 1833949 | c.408T>C | synonymous_variant | 0.8 |
| rpsA | 1833964 | c.423C>T | synonymous_variant | 0.83 |
| rpsA | 1833970 | c.429G>A | synonymous_variant | 0.8 |
| rpsA | 1833979 | c.438T>C | synonymous_variant | 1.0 |
| rpsA | 1834000 | c.459G>C | synonymous_variant | 1.0 |
| rpsA | 1834015 | c.474G>C | synonymous_variant | 1.0 |
| rpsA | 1834021 | c.480C>T | synonymous_variant | 1.0 |
| rpsA | 1834102 | c.561T>C | synonymous_variant | 1.0 |
| rpsA | 1834105 | c.564C>T | synonymous_variant | 1.0 |
| rpsA | 1834165 | c.624A>G | synonymous_variant | 1.0 |
| rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
| rpsA | 1834186 | c.645C>G | synonymous_variant | 1.0 |
| rpsA | 1834189 | c.648G>C | synonymous_variant | 1.0 |
| rpsA | 1834195 | c.654G>C | synonymous_variant | 1.0 |
| rpsA | 1834222 | c.681T>C | synonymous_variant | 1.0 |
| rpsA | 1834225 | c.684C>G | synonymous_variant | 1.0 |
| rpsA | 1834231 | c.690T>G | synonymous_variant | 1.0 |
| rpsA | 1834249 | c.708T>C | synonymous_variant | 1.0 |
| rpsA | 1834261 | c.720A>G | synonymous_variant | 1.0 |
| rpsA | 1834264 | c.723G>C | synonymous_variant | 1.0 |
| rpsA | 1834297 | c.756C>T | synonymous_variant | 1.0 |
| rpsA | 1834303 | c.762T>G | synonymous_variant | 1.0 |
| rpsA | 1834306 | c.765T>C | synonymous_variant | 1.0 |
| rpsA | 1834336 | c.795C>G | synonymous_variant | 1.0 |
| rpsA | 1834348 | c.807T>C | synonymous_variant | 1.0 |
| rpsA | 1834357 | c.816T>C | synonymous_variant | 1.0 |
| rpsA | 1834375 | c.834G>A | synonymous_variant | 1.0 |
| rpsA | 1834423 | c.882G>T | synonymous_variant | 1.0 |
| rpsA | 1834451 | c.910T>C | synonymous_variant | 1.0 |
| rpsA | 1834456 | c.915T>G | synonymous_variant | 1.0 |
| rpsA | 1834465 | c.924T>C | synonymous_variant | 1.0 |
| rpsA | 1834468 | c.927A>G | synonymous_variant | 1.0 |
| rpsA | 1834477 | c.936C>T | synonymous_variant | 1.0 |
| rpsA | 1834489 | c.948T>C | synonymous_variant | 1.0 |
| rpsA | 1834546 | c.1005T>C | synonymous_variant | 1.0 |
| ndh | 2102671 | c.372T>G | synonymous_variant | 1.0 |
| ndh | 2102674 | c.369G>A | synonymous_variant | 1.0 |
| ndh | 2102677 | c.366C>G | synonymous_variant | 1.0 |
| ndh | 2102683 | c.360T>C | synonymous_variant | 1.0 |
| ndh | 2102686 | c.357G>C | synonymous_variant | 1.0 |
| ndh | 2102700 | c.343C>T | synonymous_variant | 1.0 |
| kasA | 2517941 | c.-174C>G | upstream_gene_variant | 1.0 |
| kasA | 2517950 | c.-165C>G | upstream_gene_variant | 1.0 |
| kasA | 2517962 | c.-153C>G | upstream_gene_variant | 1.0 |
| kasA | 2517965 | c.-150C>T | upstream_gene_variant | 1.0 |
| kasA | 2517974 | c.-141T>C | upstream_gene_variant | 1.0 |
| kasA | 2517983 | c.-132T>C | upstream_gene_variant | 1.0 |
| kasA | 2517989 | c.-126T>G | upstream_gene_variant | 1.0 |
| kasA | 2517993 | c.-122G>T | upstream_gene_variant | 1.0 |
| kasA | 2518152 | p.Ser13Asn | missense_variant | 1.0 |
| kasA | 2518162 | c.48G>A | synonymous_variant | 1.0 |
| kasA | 2518169 | p.Val19Leu | missense_variant | 1.0 |
| kasA | 2518172 | p.Thr20Ala | missense_variant | 1.0 |
| kasA | 2518190 | p.Ser26Ala | missense_variant | 1.0 |
| kasA | 2518199 | p.Ile29Val | missense_variant | 1.0 |
| kasA | 2518219 | c.105T>C | synonymous_variant | 1.0 |
| kasA | 2518220 | c.106C>T | synonymous_variant | 1.0 |
| kasA | 2518245 | p.His44Arg | missense_variant | 1.0 |
| kasA | 2518248 | p.Ala45Val | missense_variant | 1.0 |
| kasA | 2518261 | p.Glu49Asp | missense_variant | 1.0 |
| kasA | 2518528 | c.414C>G | synonymous_variant | 1.0 |
| kasA | 2518534 | c.420G>C | synonymous_variant | 1.0 |
| kasA | 2518561 | c.447T>C | synonymous_variant | 1.0 |
| kasA | 2518768 | c.654C>G | synonymous_variant | 0.67 |
| kasA | 2518783 | c.669T>C | synonymous_variant | 0.75 |
| kasA | 2518789 | c.675G>C | synonymous_variant | 0.75 |
| kasA | 2518795 | c.681C>A | synonymous_variant | 0.75 |
| kasA | 2518798 | c.684G>C | synonymous_variant | 0.75 |
| kasA | 2518825 | c.711T>C | synonymous_variant | 0.67 |
| kasA | 2518840 | c.726C>G | synonymous_variant | 0.67 |
| kasA | 2518843 | c.729T>G | synonymous_variant | 0.8 |
| kasA | 2518846 | c.732G>C | synonymous_variant | 0.8 |
| kasA | 2518855 | c.741C>G | synonymous_variant | 0.8 |
| kasA | 2518864 | c.750G>C | synonymous_variant | 0.8 |
| kasA | 2518879 | c.765A>G | synonymous_variant | 0.75 |
| kasA | 2518885 | c.771T>C | synonymous_variant | 0.75 |
| kasA | 2518894 | c.780G>A | synonymous_variant | 0.75 |
| kasA | 2518898 | c.784T>C | synonymous_variant | 0.75 |
| kasA | 2518906 | c.792A>G | synonymous_variant | 0.67 |
| kasA | 2518907 | c.793T>C | synonymous_variant | 0.67 |
| kasA | 2518910 | p.Leu266Met | missense_variant | 0.67 |
| kasA | 2518915 | c.801T>C | synonymous_variant | 0.67 |
| kasA | 2518930 | c.816G>C | synonymous_variant | 1.0 |
| folC | 2747032 | c.567A>G | synonymous_variant | 1.0 |
| folC | 2747047 | c.552C>T | synonymous_variant | 0.67 |
| folC | 2747053 | c.546C>T | synonymous_variant | 0.67 |
| folC | 2747062 | c.537A>T | synonymous_variant | 1.0 |
| folC | 2747086 | c.513A>C | synonymous_variant | 1.0 |
| folC | 2747089 | c.510G>C | synonymous_variant | 1.0 |
| folC | 2747092 | p.Asp169Glu | missense_variant | 0.67 |
| folC | 2747098 | c.501C>G | synonymous_variant | 0.67 |
| folC | 2747107 | c.492G>C | synonymous_variant | 1.0 |
| folC | 2747110 | c.489T>C | synonymous_variant | 1.0 |
| folC | 2747113 | c.486C>G | synonymous_variant | 1.0 |
| pepQ | 2859723 | c.696T>C | synonymous_variant | 1.0 |
| pepQ | 2859732 | c.687C>T | synonymous_variant | 1.0 |
| pepQ | 2859735 | c.684G>C | synonymous_variant | 1.0 |
| pepQ | 2859765 | c.654G>C | synonymous_variant | 1.0 |
| pepQ | 2859771 | c.648T>C | synonymous_variant | 1.0 |
| pepQ | 2859774 | c.645C>T | synonymous_variant | 1.0 |
| pepQ | 2859778 | p.Val214Asp | missense_variant | 1.0 |
| pepQ | 2859780 | p.Gln213Ala | missense_variant | 1.0 |
| pepQ | 2859783 | c.636G>C | synonymous_variant | 1.0 |
| pepQ | 2859791 | p.Ala210Ser | missense_variant | 1.0 |
| Rv2752c | 3066387 | c.-196G>A | upstream_gene_variant | 1.0 |
| thyX | 3067400 | c.546C>G | synonymous_variant | 1.0 |
| thyX | 3067406 | c.540A>G | synonymous_variant | 1.0 |
| thyX | 3067761 | p.Arg62Lys | missense_variant | 1.0 |
| thyX | 3067765 | p.Leu61Ile | missense_variant | 1.0 |
| thyX | 3067781 | c.165C>G | synonymous_variant | 1.0 |
| thyX | 3067793 | c.153T>C | synonymous_variant | 1.0 |
| thyX | 3067934 | p.Thr4Ile | missense_variant | 1.0 |
| thyX | 3067937 | c.9G>A | synonymous_variant | 1.0 |
| thyX | 3067952 | c.-7G>A | upstream_gene_variant | 1.0 |
| thyA | 3074001 | c.471C>G | synonymous_variant | 0.67 |
| thyA | 3074004 | c.468T>C | synonymous_variant | 0.67 |
| thyA | 3074037 | c.435C>G | synonymous_variant | 0.67 |
| rpoA | 3877557 | c.951C>G | synonymous_variant | 1.0 |
| rpoA | 3877587 | c.921A>C | synonymous_variant | 1.0 |
| rpoA | 3877638 | c.870T>G | synonymous_variant | 0.67 |
| rpoA | 3877656 | c.852T>C | synonymous_variant | 0.67 |
| rpoA | 3877692 | c.816G>C | synonymous_variant | 0.6 |
| rpoA | 3877704 | c.804G>T | synonymous_variant | 0.6 |
| rpoA | 3877737 | c.771G>C | synonymous_variant | 0.67 |
| rpoA | 3877743 | c.765T>C | synonymous_variant | 0.67 |
| rpoA | 3877758 | c.750G>C | synonymous_variant | 0.67 |
| rpoA | 3877764 | c.744C>G | synonymous_variant | 0.75 |
| rpoA | 3877770 | c.738A>G | synonymous_variant | 0.8 |
| rpoA | 3877776 | c.732T>C | synonymous_variant | 0.8 |
| rpoA | 3877782 | c.726T>C | synonymous_variant | 1.0 |
| rpoA | 3877815 | c.693C>T | synonymous_variant | 1.0 |
| rpoA | 3877839 | c.669G>C | synonymous_variant | 1.0 |
| rpoA | 3877851 | c.657C>T | synonymous_variant | 1.0 |
| rpoA | 3877857 | c.651G>A | synonymous_variant | 1.0 |
| rpoA | 3878001 | c.507A>G | synonymous_variant | 1.0 |
| rpoA | 3878022 | c.486T>C | synonymous_variant | 1.0 |
| rpoA | 3878025 | c.483C>T | synonymous_variant | 1.0 |
| rpoA | 3878028 | c.480G>C | synonymous_variant | 1.0 |
| rpoA | 3878031 | c.477T>C | synonymous_variant | 1.0 |
| rpoA | 3878043 | c.465G>C | synonymous_variant | 1.0 |
| rpoA | 3878046 | c.462T>G | synonymous_variant | 1.0 |
| rpoA | 3878055 | c.453A>G | synonymous_variant | 1.0 |
| rpoA | 3878061 | c.447G>C | synonymous_variant | 1.0 |
| rpoA | 3878067 | c.441C>G | synonymous_variant | 1.0 |
| rpoA | 3878070 | c.438T>C | synonymous_variant | 1.0 |
| rpoA | 3878082 | c.426T>C | synonymous_variant | 1.0 |
| rpoA | 3878097 | c.411G>A | synonymous_variant | 1.0 |
| rpoA | 3878103 | c.405A>G | synonymous_variant | 1.0 |
| rpoA | 3878106 | c.402G>C | synonymous_variant | 1.0 |
| rpoA | 3878130 | c.378C>G | synonymous_variant | 1.0 |
| rpoA | 3878145 | c.363C>G | synonymous_variant | 1.0 |
| rpoA | 3878157 | c.351C>G | synonymous_variant | 1.0 |
| rpoA | 3878166 | c.342C>G | synonymous_variant | 1.0 |
| rpoA | 3878169 | c.339G>C | synonymous_variant | 1.0 |
| rpoA | 3878364 | c.144A>C | synonymous_variant | 1.0 |
| rpoA | 3878370 | c.138T>C | synonymous_variant | 1.0 |
| rpoA | 3878376 | c.132G>C | synonymous_variant | 1.0 |
| rpoA | 3878384 | c.124C>T | synonymous_variant | 1.0 |
| rpoA | 3878385 | c.123C>G | synonymous_variant | 1.0 |
| rpoA | 3878391 | c.117T>G | synonymous_variant | 1.0 |
| rpoA | 3878418 | c.90C>T | synonymous_variant | 1.0 |
| rpoA | 3878442 | c.66G>C | synonymous_variant | 1.0 |
| clpC1 | 4038486 | p.Gly740Asn | missense_variant | 1.0 |
| clpC1 | 4038491 | c.2214C>T | synonymous_variant | 1.0 |
| clpC1 | 4038653 | c.2052C>T | synonymous_variant | 0.67 |
| clpC1 | 4038658 | p.Lys683Gln | missense_variant | 0.67 |
| clpC1 | 4038668 | c.2037G>C | synonymous_variant | 0.67 |
| clpC1 | 4038671 | c.2034T>C | synonymous_variant | 0.67 |
| clpC1 | 4038677 | c.2028G>C | synonymous_variant | 0.75 |
| clpC1 | 4038683 | c.2022T>C | synonymous_variant | 0.8 |
| clpC1 | 4038692 | c.2013C>G | synonymous_variant | 0.8 |
| clpC1 | 4038695 | c.2010C>G | synonymous_variant | 0.8 |
| clpC1 | 4038698 | c.2007C>T | synonymous_variant | 0.8 |
| clpC1 | 4038701 | c.2004G>C | synonymous_variant | 0.8 |
| clpC1 | 4038704 | c.2001T>C | synonymous_variant | 0.8 |
| clpC1 | 4038713 | c.1992T>C | synonymous_variant | 0.8 |
| clpC1 | 4038740 | c.1965G>C | synonymous_variant | 1.0 |
| clpC1 | 4038749 | c.1956C>T | synonymous_variant | 1.0 |
| clpC1 | 4038773 | c.1932T>C | synonymous_variant | 1.0 |
| clpC1 | 4038782 | c.1923G>T | synonymous_variant | 1.0 |
| clpC1 | 4038790 | c.1915C>T | synonymous_variant | 1.0 |
| clpC1 | 4038809 | c.1896G>A | synonymous_variant | 1.0 |
| clpC1 | 4038812 | c.1893T>C | synonymous_variant | 1.0 |
| clpC1 | 4038875 | c.1830C>G | synonymous_variant | 0.67 |
| clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.67 |
| clpC1 | 4038893 | c.1812C>T | synonymous_variant | 0.67 |
| clpC1 | 4038908 | c.1797C>G | synonymous_variant | 1.0 |
| clpC1 | 4038914 | c.1791G>C | synonymous_variant | 1.0 |
| clpC1 | 4038923 | c.1782A>G | synonymous_variant | 1.0 |
| clpC1 | 4038953 | c.1752A>G | synonymous_variant | 1.0 |
| clpC1 | 4038956 | c.1749T>C | synonymous_variant | 1.0 |
| clpC1 | 4038965 | c.1740T>C | synonymous_variant | 1.0 |
| clpC1 | 4038971 | c.1734T>C | synonymous_variant | 1.0 |
| clpC1 | 4038974 | c.1731T>C | synonymous_variant | 1.0 |
| clpC1 | 4038989 | c.1716T>C | synonymous_variant | 1.0 |
| clpC1 | 4038997 | c.1708T>C | synonymous_variant | 1.0 |
| clpC1 | 4039004 | c.1701C>G | synonymous_variant | 0.67 |
| clpC1 | 4039022 | c.1683A>G | synonymous_variant | 1.0 |
| clpC1 | 4039067 | c.1638G>C | synonymous_variant | 1.0 |
| clpC1 | 4039085 | c.1620A>G | synonymous_variant | 1.0 |
| clpC1 | 4039097 | c.1608G>C | synonymous_variant | 1.0 |
| clpC1 | 4039106 | c.1599G>T | synonymous_variant | 1.0 |
| clpC1 | 4039121 | c.1584T>C | synonymous_variant | 1.0 |
| clpC1 | 4039142 | c.1563A>G | synonymous_variant | 1.0 |
| clpC1 | 4039145 | c.1560G>C | synonymous_variant | 1.0 |
| clpC1 | 4039178 | c.1527G>C | synonymous_variant | 1.0 |
| clpC1 | 4039183 | c.1522T>C | synonymous_variant | 1.0 |
| clpC1 | 4039190 | c.1515C>G | synonymous_variant | 1.0 |
| clpC1 | 4039220 | c.1485G>C | synonymous_variant | 0.4 |
| clpC1 | 4039223 | c.1482C>T | synonymous_variant | 0.6 |
| clpC1 | 4039226 | c.1479T>C | synonymous_variant | 0.6 |
| clpC1 | 4039238 | c.1467C>T | synonymous_variant | 0.6 |
| clpC1 | 4039241 | p.Leu488Phe | missense_variant | 0.4 |
| clpC1 | 4039259 | c.1446G>A | synonymous_variant | 0.5 |
| clpC1 | 4039262 | c.1443C>T | synonymous_variant | 0.5 |
| clpC1 | 4039268 | c.1437C>T | synonymous_variant | 0.67 |
| clpC1 | 4039274 | c.1431G>C | synonymous_variant | 1.0 |
| clpC1 | 4039286 | c.1419T>C | synonymous_variant | 1.0 |
| clpC1 | 4039298 | c.1407T>C | synonymous_variant | 1.0 |
| clpC1 | 4039304 | c.1401G>A | synonymous_variant | 1.0 |
| clpC1 | 4039338 | p.Thr456Gln | missense_variant | 1.0 |
| clpC1 | 4039361 | c.1344C>A | synonymous_variant | 1.0 |
| clpC1 | 4039382 | c.1323C>T | synonymous_variant | 1.0 |
| clpC1 | 4039391 | c.1314T>G | synonymous_variant | 1.0 |
| clpC1 | 4039409 | c.1296T>C | synonymous_variant | 1.0 |
| clpC1 | 4039412 | c.1293T>A | synonymous_variant | 1.0 |
| clpC1 | 4039415 | p.Glu430Asp | missense_variant | 1.0 |
| clpC1 | 4039508 | c.1197G>C | synonymous_variant | 1.0 |
| clpC1 | 4039526 | c.1179G>A | synonymous_variant | 1.0 |
| clpC1 | 4039532 | c.1173C>T | synonymous_variant | 1.0 |
| clpC1 | 4039553 | c.1152C>A | synonymous_variant | 1.0 |
| clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.83 |
| clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.83 |
| clpC1 | 4039576 | p.Ala377Ser | missense_variant | 0.8 |
| clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.83 |
| clpC1 | 4039583 | c.1122C>T | synonymous_variant | 0.83 |
| clpC1 | 4039622 | c.1083C>T | synonymous_variant | 0.83 |
| clpC1 | 4039664 | c.1041G>C | synonymous_variant | 1.0 |
| clpC1 | 4039670 | c.1035G>C | synonymous_variant | 1.0 |
| clpC1 | 4039694 | c.1011G>C | synonymous_variant | 1.0 |
| clpC1 | 4039724 | c.981A>G | synonymous_variant | 1.0 |
| clpC1 | 4040033 | c.672G>C | synonymous_variant | 1.0 |
| clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 1.0 |
| clpC1 | 4040093 | c.612C>G | synonymous_variant | 1.0 |
| clpC1 | 4040105 | c.600C>G | synonymous_variant | 1.0 |
| clpC1 | 4040147 | c.558A>G | synonymous_variant | 1.0 |
| clpC1 | 4040654 | c.51G>A | synonymous_variant | 1.0 |
| clpC1 | 4040657 | c.48T>G | synonymous_variant | 1.0 |
| clpC1 | 4040662 | c.43C>T | synonymous_variant | 1.0 |
| clpC1 | 4040669 | c.36C>G | synonymous_variant | 1.0 |
| clpC1 | 4040695 | c.10C>A | synonymous_variant | 1.0 |
| clpC1 | 4040711 | c.-7G>A | upstream_gene_variant | 1.0 |
| embC | 4240729 | c.867C>G | synonymous_variant | 1.0 |
| embB | 4245980 | c.-534C>T | upstream_gene_variant | 1.0 |
| embA | 4245987 | p.Gln919Glu | missense_variant | 1.0 |
| embB | 4245992 | c.-522C>G | upstream_gene_variant | 1.0 |
| embB | 4246010 | c.-504G>C | upstream_gene_variant | 1.0 |
| embB | 4246013 | c.-501T>C | upstream_gene_variant | 1.0 |
| embA | 4246020 | p.Ala930Thr | missense_variant | 1.0 |
| embA | 4246041 | p.Asp937Asn | missense_variant | 1.0 |
| embB | 4246049 | c.-465G>C | upstream_gene_variant | 1.0 |
| embB | 4246055 | c.-459T>C | upstream_gene_variant | 1.0 |
| embB | 4246058 | c.-456C>G | upstream_gene_variant | 1.0 |
| embB | 4246064 | c.-450T>C | upstream_gene_variant | 1.0 |
| embB | 4247497 | c.984T>C | synonymous_variant | 0.75 |
| embB | 4247500 | c.987C>G | synonymous_variant | 0.75 |
| embB | 4247506 | c.993C>G | synonymous_variant | 0.75 |
| embB | 4247512 | c.999T>C | synonymous_variant | 0.75 |
| embB | 4247527 | c.1014G>C | synonymous_variant | 0.67 |
| embB | 4247539 | c.1026T>C | synonymous_variant | 0.67 |
| embB | 4247550 | p.Ala346Asp | missense_variant | 0.67 |
| embB | 4247554 | c.1041T>C | synonymous_variant | 0.67 |
| embB | 4247566 | c.1053C>G | synonymous_variant | 1.0 |
| embB | 4247572 | c.1059A>C | synonymous_variant | 1.0 |
| embB | 4247971 | c.1458C>A | synonymous_variant | 1.0 |
| embB | 4247972 | p.Thr487Phe | missense_variant | 1.0 |
| embB | 4247983 | c.1470G>C | synonymous_variant | 1.0 |
| embB | 4248007 | c.1494C>A | synonymous_variant | 1.0 |
| embB | 4248157 | c.1644A>G | synonymous_variant | 1.0 |
| embB | 4248161 | c.1648C>T | synonymous_variant | 1.0 |
| embB | 4248169 | c.1656C>G | synonymous_variant | 1.0 |
| embB | 4248190 | c.1677G>C | synonymous_variant | 1.0 |
