Rv0006 - c.-662A>G
Drug resistance types
6 Sensitive
2 RR-TB
97 HR-TB
12 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
70 Other
lineage Counts
| lineage | Count |
|---|---|
| 112 | |
| lineage4.5 | 1 |
| lineage2.2.1 | 10 |
| lineage2 | 2 |
| lineage4.1.1 | 3 |
| lineage4.1 | 2 |
| lineage4.8 | 4 |
| lineage4 | 10 |
| lineage2.1 | 1 |
| lineage2.2 | 1 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 2 |
| lineage4;lineage1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2.1 | 10 |
| lineage4.9 | 11 |
| lineage1.1 | 1 |
| La2 | 1 |
| lineage4.2.1 | 1 |
| lineage3 | 2 |
| lineage4.1.3 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.3 | 2 |
| lineage1.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage3.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 189 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1640750 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | ERR4815604 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675502 | Other | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675486 | HR-TB | None | SRR5485412 | MDR-TB | None | SRR3675311 | Other | None | SRR5485533 | Sensitive | None | ERR2229542 | Other | lineage4.8 | None | SRR3675236 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675550 | Other | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | SRR5341400 | HR-TB | lineage4 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2513980 | Other | lineage4.8 | gb | ERR4819781 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR5485615 | MDR-TB | None | SRR6046133 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693239 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046015 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6325448 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR5311081 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR294248 | HR-TB | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | SRR7496509 | Other | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7585435 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323043 | HR-TB | None | ERR067681 | HR-TB | None | ERR3283027 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR5336148 | Other | None | ERR3468544 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3439432 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797071 | Other | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797083 | HR-TB | None | ERR3797069 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4811022 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4798406 | HR-TB | None | ERR4810741 | HR-TB | None | ERR6358991 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811105 | HR-TB | None | ERR736874 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR8773492 | Sensitive | lineage4.3.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1172728 | MDR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1173562 | HR-TB | lineage4 | None | SRR1172951 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196546 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None |
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