lineage | Count |
---|---|
122 | |
lineage4 | 10 |
lineage4.9 | 11 |
lineage1.2.2.2 | 1 |
lineage2 | 2 |
lineage3 | 2 |
La1 | 2 |
lineage2.2.1 | 8 |
lineage2.2 | 4 |
lineage4.8;La3 | 2 |
lineage4.6.1.1 | 1 |
lineage4.1 | 2 |
lineage1.1.2 | 1 |
lineage5.2 | 2 |
lineage4.1.2.1 | 11 |
lineage4.8;lineage4.1 | 1 |
lineage4.8 | 2 |
lineage4.1.3 | 2 |
lineage6 | 1 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage4.3.3 | 2 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.5 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.1.1 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.3.2.1 | 1 |
lineage4.1;lineage1 | 1 |
La1.8.1 | 1 |
lineage4.7 | 2 |
lineage2.2.1.1 | 1 |
lineage4.2.1 | 1 |
lineage1.1 | 1 |
La2 | 1 |
spoligotype | Count |
---|---|
None | 207 |
ID | Drug resistance | Lineage | Country iso2 | ERR4769452 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR5336148 | Other | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR702404 | HR-TB | None | ERR8976043 | HR-TB | None | ERR736874 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9786440 | Other | lineage4.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1172234 | Other | None | SRR11033610 | Sensitive | lineage4.3.3 | None | SRR1169194 | Other | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1175049 | RR-TB | None | SRR1184294 | HR-TB | None | SRR1173788 | Other | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR1196768 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR12142341 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR19303884 | HR-TB | None | SRR14801749 | Sensitive | None | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR13837800 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR4815604 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR11081258 | Other | lineage4.8 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675221 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR6325445 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR181744 | HR-TB | None | SRR3675234 | Other | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675311 | Other | None | SRR3675270 | HR-TB | None | SRR3675501 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816999 | Other | None | SRR3675558 | HR-TB | None | ERR4817060 | RR-TB | None | ERR4817037 | Other | lineage4.9 | None | SRR3675571 | HR-TB | None | ERR212123 | Other | None | SRR3675572 | Other | None | ERR212138 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR4033985 | HR-TB | lineage4.3.2.1 | None | SRR5007188 | Other | lineage4 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR2514692 | Other | None | ERR2693239 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | ERR2693231 | Other | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR5535933 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693257 | Other | None | SRR6045952 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6325442 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR502532 | HR-TB | None | SRR6789626 | Other | None | ERR294248 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7496509 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR1035157 | Other | lineage4.9 | None | ERR323043 | HR-TB | None | ERR323038 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None |
---|