Rv3793 - c.1677T>C


Drug resistance types
163 Sensitive 3 RR-TB 125 HR-TB 42 MDR-TB 7 Pre-XDR-TB 0 XDR-TB 92 Other
lineage Counts
lineage Count
lineage2.2.1 8
lineage4.1.2.1 110
124
lineage2 2
lineage4.5 1
lineage2.2 4
lineage4.1 2
lineage4.3.4.2.1 118
lineage4.1.1 1
lineage4.6.1.2;lineage4.3.4.2.1 1
lineage4.3.4.2.1;lineage1.1.2 1
lineage4.9 13
lineage4.3.4.2.1;lineage1.1.3.2 1
lineage4.3.4.2.1;lineage3.1.1 1
lineage4 12
lineage4.8 3
lineage4.8;La3 1
La1.8.1 1
lineage4;lineage1.1 1
lineage4.9;lineage4.1.2.1 1
lineage4.7 2
lineage1.1 1
lineage2.2.1.1 1
lineage5.2 2
lineage4.2.1 1
La2 1
lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3;lineage2.2.1 1
La1 2
lineage4.1.3 2
lineage3 2
lineage1.2.2.2 1
lineage4.6.1.1 1
lineage1.1.2 1
lineage4.8;lineage4.1 1
lineage4.6.2.2 1
lineage6.3.1 1
lineage4.3.3 2
lineage3.1 2
lineage4.3.4.1 1
spoligotype Counts
spoligotype Count
None 432
Geographic prevalence
Country level data for this variant is available for 144 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR18003019 Other lineage2.2.1 None
SRR14802162 Other lineage4.1.2.1 None
SRR16370621 Sensitive lineage4.1.2.1 None
SRR1640750 HR-TB None
SRR15368973 Other None
SRR20969677 HR-TB lineage2 None
SRR19304036 HR-TB None
SRR18213713 HR-TB lineage4.5 None
SRR19303884 HR-TB None
SRR19317519 Sensitive lineage4.1.2.1 None
ERR11068433 Sensitive lineage4.1.2.1 None
SRR20970016 Other lineage2.2 None
SRR21239946 Other lineage4.1.2.1 None
ERR11067687 Sensitive lineage4.1.2.1 None
ERR11067826 Sensitive lineage4.1.2.1 None
ERR11068256 Sensitive lineage4.1.2.1 None
SRR20969708 HR-TB lineage2.2 None
ERR11067905 Sensitive lineage4.1.2.1 None
ERR11068160 Sensitive lineage4.1.2.1 None
ERR11068369 Sensitive lineage4.1.2.1 None
ERR11082125 Sensitive lineage4.1.2.1 None
ERR11068529 Sensitive lineage4.1.2.1 None
ERR11068820 Sensitive lineage4.1.2.1 None
ERR11081095 Sensitive lineage4.1.2.1 None
ERR11081072 MDR-TB lineage4.1.2.1 None
ERR11082176 Sensitive lineage4.1.2.1 None
SRR3675464 HR-TB lineage4.1 None
ERR11082571 Sensitive lineage4.1.2.1 None
ERR11082670 Sensitive lineage4.1.2.1 None
ERR181904 Sensitive lineage4.3.4.2.1 mw
ERR181914 Sensitive lineage4.3.4.2.1 mw
ERR4815604 HR-TB None
ERR4815221 Sensitive lineage4.1.2.1 gb
ERR176782 Sensitive lineage4.3.4.2.1 mw
ERR176798 Sensitive lineage4.3.4.2.1 mw
ERR181924 Sensitive lineage4.3.4.2.1 mw
SRR3675465 HR-TB None
SRR6325445 HR-TB None
ERR176793 Other lineage4.1.1 None
ERR176828 HR-TB lineage4.3.4.2.1 mw
ERR181934 HR-TB lineage4.3.4.2.1 mw
ERR2041767 RR-TB lineage4.1.2.1 rs
ERR4814352 HR-TB lineage2.2.1 None
SRR3675482 HR-TB None
ERR161033 HR-TB None
ERR161074 Sensitive lineage4.3.4.2.1 mw
ERR161151 Sensitive lineage4.3.4.2.1 mw
ERR161073 Sensitive lineage4.3.4.2.1 mw
ERR161146 Sensitive lineage4.3.4.2.1 mw
ERR4814551 Other lineage4.1.2.1 gb
ERR161157 Sensitive lineage4.3.4.2.1 mw
SRR3675486 HR-TB None
ERR161187 Sensitive lineage4.3.4.2.1 mw
ERR161172 Sensitive lineage4.3.4.2.1 mw
ERR161186 Sensitive lineage4.3.4.2.1 mw
ERR181747 Sensitive lineage4.3.4.2.1 mw
ERR163944 Sensitive lineage4.3.4.2.1 mw
ERR163934 Sensitive lineage4.3.4.2.1 mw
ERR163953 MDR-TB lineage4.3.4.2.1 mw
ERR163958 MDR-TB lineage4.3.4.2.1 mw
ERR163985 Sensitive lineage4.3.4.2.1 mw
ERR4815447 Sensitive lineage4.1.2.1 gb
ERR181762 HR-TB lineage4.3.4.2.1 mw
ERR181744 HR-TB None
ERR181985 Sensitive lineage4.3.4.2.1 mw
ERR190393 HR-TB lineage4.3.4.2.1 mw
ERR181761 Sensitive lineage4.3.4.2.1 None
ERR164016 Sensitive lineage4.3.4.2.1 mw
ERR181772 Sensitive lineage4.3.4.2.1 mw
ERR181986 MDR-TB lineage4.3.4.2.1 mw
SRR3675221 HR-TB None
ERR181764 Sensitive lineage4.3.4.2.1 mw
ERR182002 Sensitive lineage4.3.4.2.1 mw
ERR181792 Sensitive lineage4.3.4.2.1 mw
ERR182015 Sensitive lineage4.6.1.2;lineage4.3.4.2.1 mw
SRR3675232 Other lineage4.1.2.1 None
SRR3675236 HR-TB None
ERR190364 Sensitive lineage4.3.4.2.1 mw
SRR3675234 Other None
ERR176520 Sensitive lineage4.3.4.2.1 mw
ERR176469 Sensitive lineage4.3.4.2.1 mw
ERR176500 Sensitive lineage4.3.4.2.1 mw
ERR176546 Sensitive lineage4.3.4.2.1 mw
ERR190370 MDR-TB lineage4.3.4.2.1 mw
ERR176567 Sensitive lineage4.3.4.2.1 mw
ERR176548 Sensitive lineage4.3.4.2.1 mw
ERR176554 HR-TB lineage4.3.4.2.1 mw
ERR181861 MDR-TB lineage4.3.4.2.1 mw
ERR190379 Sensitive lineage4.3.4.2.1;lineage1.1.2 mw
SRR3675270 HR-TB None
ERR182037 HR-TB lineage4.3.4.2.1 mw
ERR176596 Sensitive lineage4.3.4.2.1 mw
SRR3675280 HR-TB lineage4.9 None
ERR181877 Sensitive lineage4.3.4.2.1 mw
ERR176629 MDR-TB lineage4.3.4.2.1 mw
ERR176617 Sensitive lineage4.3.4.2.1 mw
ERR181885 Sensitive lineage4.3.4.2.1 mw
ERR181878 Sensitive lineage4.3.4.2.1 mw
ERR176616 MDR-TB lineage4.3.4.2.1;lineage1.1.3.2 mw
SRR3675284 HR-TB lineage4.9 None
ERR176634 Sensitive lineage4.3.4.2.1 mw
ERR176645 Sensitive lineage4.3.4.2.1 mw
ERR4814921 Sensitive lineage4.1.2.1 gb
ERR176659 Sensitive lineage4.3.4.2.1 mw
SRR3675311 Other None
ERR176656 Sensitive lineage4.3.4.2.1 mw
ERR176709 HR-TB lineage4.3.4.2.1;lineage3.1.1 mw
ERR176679 Sensitive lineage4.3.4.2.1 mw
ERR176690 Sensitive lineage4.3.4.2.1 mw
ERR176696 HR-TB lineage4.3.4.2.1 mw
ERR176736 HR-TB lineage4.3.4.2.1 mw
ERR176732 Sensitive lineage4.3.4.2.1 mw
ERR176753 Sensitive lineage4.3.4.2.1 mw
ERR176752 HR-TB lineage4.3.4.2.1 mw
ERR176746 Sensitive lineage4.3.4.2.1 mw
ERR176742 Sensitive lineage4.3.4.2.1 mw
SRR3675456 HR-TB None
ERR2027263 Other lineage4 None
ERR4816999 Other None
ERR2446273 Sensitive lineage4.1.2.1 nl
ERR2229084 Sensitive lineage4.8 dk
ERR4817037 Other lineage4.9 None
ERR212023 Sensitive lineage4.3.4.2.1 mw
ERR212008 HR-TB lineage4.3.4.2.1 mw
ERR212032 Sensitive lineage4.3.4.2.1 mw
SRR3675555 HR-TB None
ERR4817060 RR-TB None
ERR212078 HR-TB lineage4.3.4.2.1 mw
ERR212077 Sensitive lineage4.3.4.2.1 mw
SRR3675572 Other None
SRR3675558 HR-TB None
ERR212123 Other None
ERR4817106 HR-TB lineage4.1.2.1 gb
ERR212122 HR-TB lineage4.3.4.2.1 mw
ERR3275362 Sensitive lineage4.1.2.1 nl
ERR212167 Sensitive lineage4.3.4.2.1 mw
SRR3675574 HR-TB None
ERR212168 Sensitive lineage4.3.4.2.1 mw
SRR3675571 HR-TB None
ERR212174 HR-TB lineage4.3.4.2.1 mw
ERR216916 Sensitive lineage4.3.4.2.1 mw
ERR216907 Sensitive lineage4.3.4.2.1 mw
ERR216915 Sensitive lineage4.3.4.2.1 mw
ERR216955 Sensitive lineage4.3.4.2.1 None
ERR2446066 Sensitive lineage4.1.2.1 nl
ERR216978 Sensitive lineage4.3.4.2.1 None
ERR2446526 Sensitive lineage4.1.2.1 nl
ERR221617 MDR-TB lineage4.3.4.2.1 mw
SRR3742665 HR-TB None
ERR4816585 Other lineage2.2 None
ERR221525 Sensitive lineage4.3.4.2.1 mw
SRR5073837 Sensitive lineage4.1.2.1 vn
ERR221618 MDR-TB lineage4.3.4.2.1 mw
ERR221616 MDR-TB lineage4.3.4.2.1 mw
ERR4817818 Sensitive lineage4.1.2.1 gb
ERR245661 Sensitive lineage4.3.4.2.1 mw
ERR4818744 Sensitive lineage4.1.2.1 gb
ERR234659 HR-TB None
ERR245667 Sensitive lineage4.3.4.2.1 mw
ERR4817893 Other lineage4.8;La3 None
ERR4818021 Other La1.8.1 None
ERR245718 HR-TB lineage4.3.4.2.1 mw
ERR245706 Sensitive lineage4.3.4.2.1 mw
ERR245733 HR-TB lineage4.3.4.2.1 mw
ERR245780 Sensitive lineage4.3.4.2.1 mw
ERR245738 Sensitive lineage4.3.4.2.1 mw
ERR245741 MDR-TB lineage4.3.4.2.1 mw
ERR245749 Sensitive lineage4.3.4.2.1 mw
ERR245756 Sensitive lineage4.3.4.2.1 mw
ERR4819322 Other lineage4;lineage1.1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
SRR5007188 Other lineage4 None
ERR2512892 Sensitive lineage4.1.2.1 None
ERR552810 Other lineage4.1.2.1 de
ERR2512614 Sensitive lineage4.1.2.1 gb
ERR2517176 Sensitive lineage4.1.2.1 nl
ERR4820854 Other lineage4.1.2.1 None
ERR234222 Sensitive lineage4.1.2.1 co
ERR2517007 MDR-TB lineage4.1.2.1 gb
ERR4820481 Sensitive lineage4.1.2.1 gb
ERR1035138 MDR-TB None
ERR4819746 Sensitive lineage4.1.2.1 gb
ERR4820535 Sensitive lineage4.9;lineage4.1.2.1 None
ERR4819828 HR-TB lineage4.1.2.1 gb
ERR2514692 Other None
ERR4819781 Other lineage2.2.1 None
ERR2514821 Other lineage2.2.1 None
SRR5341302 HR-TB None
SRR5341333 HR-TB None
ERR4819932 Other lineage4.7 None
ERR2515063 Sensitive lineage4.1.2.1 gb
SRR5341330 HR-TB None
ERR4820644 Sensitive lineage4.1.2.1 gb
ERR4820089 Sensitive lineage4.1.2.1 None
ERR2693231 Other None
ERR2517463 Sensitive lineage4.1.2.1 nl
ERR2516859 MDR-TB lineage4.1.2.1 gb
ERR2517631 Sensitive lineage4.1.2.1 nl
ERR2693239 HR-TB None
SRR6045420 Other lineage4.1.2.1 gb
ERR2693254 Other None
SRR5486870 MDR-TB lineage4.1.2.1 None
ERR2693230 Other None
SRR6045526 HR-TB None
ERR2693257 Other None
SRR23339992 Sensitive lineage4.1.2.1 None
SRR5535933 HR-TB None
ERR11067230 Sensitive lineage4.1.2.1 None
SRR6044790 HR-TB None
SRR23340004 Sensitive lineage4.1.2.1 None
ERR4822433 Sensitive lineage4.1.2.1 de
ERR4822535 Sensitive lineage4.1.2.1 None
ERR3275249 Sensitive lineage4.1.2.1 nl
SRR23340008 Sensitive lineage4.1.2.1 None
SRR23340011 Sensitive lineage4.1.2.1 None
SRR6045783 Sensitive lineage4.1.2.1 gb
SRR6044855 Other lineage4.9 None
SRR6046066 HR-TB None
SRR6045053 Other None
SRR6045217 Other lineage4 None
SRR6046046 Other None
SRR6045335 Other lineage4.1.2.1 None
SRR6045327 HR-TB None
SRR6045952 HR-TB None
SRR6325442 HR-TB None
ERR278594 HR-TB None
SRR6046382 HR-TB lineage2.2.1 None
SRR6046305 Other lineage4.9 None
SRR6046299 HR-TB None
ERR4829695 HR-TB lineage4.1.2.1 it
ERR3275360 Sensitive lineage4.1.2.1 nl
ERR4829680 Sensitive lineage4.1.2.1 it
SRR6046514 HR-TB None
ERR11049748 Sensitive lineage4.1.2.1 None
ERR4828954 Pre-XDR-TB lineage4.1.2.1 None
SRR6325444 HR-TB None
SRR6046644 HR-TB None
SRR6325448 HR-TB None
SRR6046540 HR-TB None
SRR6046642 RR-TB lineage4.1.2.1 None
SRR6046895 Sensitive lineage4.1.2.1 gb
SRR6325447 HR-TB None
SRR6046878 HR-TB lineage4 None
ERR4831242 MDR-TB lineage4.1.2.1 de
SRR6458423 HR-TB lineage2.2.1 None
ERR3077978 Other lineage1.1 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR294248 HR-TB None
ERR4872094 MDR-TB lineage5.2 None
SRR6785413 Other lineage2.2.1 None
SRR6789626 Other None
SRR6785262 Sensitive lineage4.2.1 None
SRR6930933 Other lineage4.1.2.1 None
ERR502524 HR-TB La2 None
ERR294266 HR-TB None
ERR502510 Sensitive lineage4 None
ERR5311081 HR-TB None
ERR5311099 HR-TB None
ERR502532 HR-TB None
ERR5311090 HR-TB None
SRR7496509 Other None
SRR7131023 Other lineage4.1.2.1 None
ERR551103 Sensitive lineage4.1.2.1 de
SRR7341700 MDR-TB lineage4.1.2.1 ro
ERR11044141 MDR-TB lineage4.1.2.1 None
SRR7496523 Other lineage4.7 None
SRR9738526 MDR-TB lineage4.1.2.1 None
SRR7585435 Other lineage4.9 None
SRR7592381 Pre-XDR-TB lineage4.1.2.1 None
ERR323107 Other lineage4 None
SRR7496517 Other None
SRR7592340 MDR-TB lineage4.1.2.1 None
SRR7592374 Pre-XDR-TB lineage4.1.2.1 None
ERR11067500 Sensitive lineage4.1.2.1 None
ERR323043 HR-TB None
ERR323096 Sensitive lineage4.3.4.2.1 mw
ERR323089 Sensitive lineage4.3.4.2.1 mw
ERR023252 Sensitive lineage4.1.2.1 None
ERR036189 Sensitive lineage4.3.4.2.1 mw
ERR036185 MDR-TB lineage4.9;lineage4.3.4.2.1;lineage4.3.4.1;lineage3;lineage2.2.1 None
ERR036188 MDR-TB lineage4.3.4.2.1 mw
ERR037486 MDR-TB lineage4.3.4.2.1 mw
ERR037483 Sensitive lineage4.3.4.2.1 mw
ERR037524 Sensitive lineage4.3.4.2.1 mw
ERR037518 HR-TB lineage4.3.4.2.1 mw
ERR037505 Sensitive lineage4.3.4.2.1 mw
ERR037539 Sensitive lineage4.3.4.2.1 mw
ERR037522 HR-TB lineage4.3.4.2.1 mw
ERR037535 Sensitive lineage4.3.4.2.1 None
ERR037532 Sensitive lineage4.3.4.2.1 mw
ERR1035157 Other lineage4.9 None
ERR1034652 Other None
ERR037553 Sensitive lineage4.3.4.2.1 mw
ERR11049088 Sensitive lineage4.1.2.1 None
ERR10465795 Sensitive lineage4.1.2.1 None
ERR1063848 MDR-TB lineage4.3.4.2.1 None
ERR1063864 Sensitive lineage4.3.4.2.1 None
ERR1063883 Sensitive lineage4 None
ERR1063878 HR-TB lineage4.3.4.2.1 None
ERR11043135 Sensitive lineage4.1.2.1 None
ERR11042976 Sensitive lineage4.1.2.1 None
ERR11043398 Sensitive lineage4.1.2.1 None
ERR11043352 Sensitive lineage4.1.2.1 None
ERR11044641 Sensitive lineage4.1.2.1 None
ERR11044564 Sensitive lineage4.1.2.1 None
ERR11043726 Sensitive lineage4.1.2.1 None
ERR11044249 MDR-TB lineage4.1.2.1 None
ERR11044381 Sensitive lineage4.1.2.1 None
ERR126623 Sensitive lineage4.3.4.2.1 mw
ERR3283017 HR-TB None
ERR11049176 Sensitive lineage4.1.2.1 None
ERR323115 Sensitive lineage4 None
ERR11049177 Sensitive lineage4.1.2.1 None
ERR3283010 Other La1 None
ERR3283013 MDR-TB lineage4 None
ERR3797046 HR-TB None
ERR3283024 Other None
ERR3283032 HR-TB None
ERR3283036 HR-TB None
ERR3797016 HR-TB None
ERR3797014 Other None
ERR3283027 HR-TB None
ERR3283048 HR-TB lineage4.9 None
ERR3468544 HR-TB None
ERR3797017 Other None
ERR3797061 Other None
ERR3797044 Other None
ERR3804169 HR-TB lineage4.1.3 None
ERR3797069 Other None
ERR3797082 Other lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR473285 Sensitive lineage4.3.4.2.1 None
ERR387051 HR-TB None
ERR4407463 HR-TB None
ERR4188350 HR-TB None
ERR4195662 Sensitive lineage4.1.2.1 None
ERR473328 HR-TB lineage4.3.4.2.1 None
ERR473289 Sensitive lineage4.3.4.2.1 None
ERR473290 HR-TB lineage4.3.4.2.1 None
ERR473313 Sensitive lineage4.3.4.2.1 None
ERR473308 HR-TB lineage4.3.4.2.1 None
ERR4769452 HR-TB None
ERR4769450 HR-TB None
ERR4769457 Other lineage4.9 None
ERR4800341 Other lineage3 None
ERR4769474 HR-TB lineage4 None
ERR4797201 Other lineage1.2.2.2 None
ERR4798262 HR-TB La1 None
ERR4799025 Pre-XDR-TB None
ERR4799513 HR-TB lineage2.2 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797588 MDR-TB lineage3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4811022 HR-TB None
ERR4810741 HR-TB None
ERR5979497 Other lineage4.1.2.1 None
ERR5336148 Other None
ERR4811105 HR-TB None
ERR4811142 MDR-TB None
ERR6358979 Other None
ERR6358755 Other lineage4.6.1.1 None
ERR6359045 HR-TB None
ERR736839 Other None
ERR702404 HR-TB None
ERR702406 HR-TB None
ERR736813 Sensitive lineage4.3.4.2.1 None
ERR736867 HR-TB None
ERR736851 Sensitive lineage4.3.4.2.1 None
ERR779666 Sensitive lineage4.3.4.2.1 None
ERR736874 HR-TB None
ERR779674 Sensitive lineage4.3.4.2.1 None
ERR9117709 HR-TB None
ERR8976043 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9786440 Other lineage4.1 None
ERR9119500 MDR-TB lineage5.2 None
ERR9121145 Sensitive lineage4.1.2.1 None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786444 Sensitive lineage4.8 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786604 Other None
ERR9786569 Other lineage4.8 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
ERR9786627 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786843 Other None
ERR9786682 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9787139 Other lineage6.3.1 None
SRR10525361 MDR-TB lineage4.1.2.1 None
ERR9787197 Other None
SRR10525320 MDR-TB lineage4.1.2.1 None
SRR1172728 MDR-TB None
ERR11050264 Sensitive lineage4.1.2.1 None
ERR11050315 Sensitive lineage4.1.2.1 None
SRR1166122 MDR-TB lineage4.1.2.1 ro
SRR1166283 MDR-TB lineage4.1.2.1 ro
SRR1169194 Other None
SRR1172234 Other None
SRR1172857 MDR-TB None
SRR1172817 HR-TB None
SRR1173118 Other None
SRR1172951 Other None
SRR1173400 Other None
SRR1173384 Other lineage4 None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173484 Other lineage4 None
SRR1173629 Other None
SRR1173633 HR-TB lineage4.9 None
SRR1173778 Other None
SRR1184294 HR-TB None
SRR1173788 Other None
SRR1175074 MDR-TB None
SRR1196546 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184346 HR-TB lineage3.1 None
SRR1184381 MDR-TB None
SRR1184380 HR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR1196494 MDR-TB None
SRR1184388 Other None
SRR12142341 HR-TB None
SRR1196566 HR-TB None
SRR14782405 HR-TB None
SRR13837800 Sensitive lineage4.9 None
SRR12416840 MDR-TB lineage4.9 None
SRR12416824 HR-TB None
ERR11050513 Sensitive lineage4.1.2.1 None
SRR13583478 HR-TB lineage4.3.4.1 None