Run ID: ERR11068820
Sample name:
Date: 07-04-2023 03:04:21
Number of reads: 3436458
Percentage reads mapped: 99.43
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.97 |
lineage4.1.2 | Euro-American | T;H | None | 0.98 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 0.99 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.97 |
mshA | 575237 | c.-111C>T | upstream_gene_variant | 0.13 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.25 |
mshA | 576113 | p.Arg256Gly | missense_variant | 0.36 |
mshA | 576119 | p.Ala258Pro | missense_variant | 0.26 |
mshA | 576273 | p.Pro309Leu | missense_variant | 0.15 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.94 |
rpoC | 764959 | c.1590G>A | synonymous_variant | 0.95 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 0.98 |
rpoC | 766974 | p.Ala1202Val | missense_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779296 | p.Gly103Ser | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304208 | c.1278C>T | synonymous_variant | 0.2 |
fbiC | 1304287 | p.Ile453Val | missense_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917944 | p.Ala2Val | missense_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155732 | p.Gln127Arg | missense_variant | 0.15 |
Rv1979c | 2223233 | c.-69G>C | upstream_gene_variant | 0.96 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 0.96 |
ribD | 2987282 | c.444C>T | synonymous_variant | 0.4 |
thyX | 3067415 | c.531C>T | synonymous_variant | 0.11 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568425 | c.255T>A | synonymous_variant | 0.25 |
fbiB | 3641625 | p.Ala31Thr | missense_variant | 0.5 |
fbiB | 3642270 | p.Ala246Thr | missense_variant | 0.14 |
rpoA | 3878601 | c.-94C>G | upstream_gene_variant | 0.27 |
embC | 4240508 | p.Ala216Thr | missense_variant | 0.2 |
embC | 4240559 | p.Ala233Thr | missense_variant | 0.17 |
embC | 4240591 | c.729C>T | synonymous_variant | 0.14 |
embC | 4241539 | c.1677T>C | synonymous_variant | 0.96 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243985 | c.753G>T | synonymous_variant | 0.2 |
embA | 4244232 | p.Ala334Thr | missense_variant | 0.17 |
embA | 4244855 | c.1623G>T | synonymous_variant | 0.22 |
embB | 4246544 | p.Thr11Ala | missense_variant | 0.14 |
embB | 4246699 | c.186G>A | synonymous_variant | 0.17 |
embB | 4247110 | c.597G>A | synonymous_variant | 0.17 |
aftB | 4267699 | c.1138C>T | synonymous_variant | 0.13 |
whiB6 | 4338292 | p.Ala77Val | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |