Run ID: ERR11067500
Sample name:
Date: 04-04-2023 22:03:10
Number of reads: 2344391
Percentage reads mapped: 99.5
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777081 | p.Lys467Arg | missense_variant | 0.48 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.15 |
PPE35 | 2169047 | p.Ile522Val | missense_variant | 0.14 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 0.3 |
PPE35 | 2169056 | c.1557A>G | synonymous_variant | 0.13 |
PPE35 | 2169059 | c.1554G>A | synonymous_variant | 0.18 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 0.32 |
PPE35 | 2169065 | p.Ala516Thr | missense_variant | 0.18 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.16 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.12 |
PPE35 | 2170062 | p.Ala184Gly | missense_variant | 0.24 |
Rv1979c | 2223233 | c.-69G>C | upstream_gene_variant | 0.49 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4241539 | c.1677T>C | synonymous_variant | 0.37 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.99 |
embB | 4247024 | p.Pro171Ala | missense_variant | 0.17 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |