Run ID: ERR037483
Sample name:
Date: 31-03-2023 08:33:15
Number of reads: 9135102
Percentage reads mapped: 99.74
Strain: lineage4.3.4.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 1.0 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
lineage4.3.4.2.1 | Euro-American (LAM) | LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6140 | p.Val301Leu | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.29 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777399 | p.Thr361Arg | missense_variant | 0.17 |
mmpR5 | 779371 | p.Ala128Pro | missense_variant | 0.3 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
atpE | 1461019 | c.-26C>A | upstream_gene_variant | 0.22 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476408 | n.2751G>C | non_coding_transcript_exon_variant | 0.26 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169866 | c.747G>C | synonymous_variant | 0.28 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
eis | 2714366 | p.Val323Leu | missense_variant | 0.27 |
eis | 2715586 | c.-254G>C | upstream_gene_variant | 0.45 |
Rv2752c | 3064741 | p.Gly484Ala | missense_variant | 0.25 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.27 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
fbiB | 3641955 | p.Gly141Arg | missense_variant | 0.2 |
fbiB | 3642734 | c.1200G>C | synonymous_variant | 0.25 |
fbiB | 3642772 | p.Asp413Ala | missense_variant | 0.21 |
alr | 3840719 | c.702A>G | synonymous_variant | 0.99 |
ddn | 3987013 | p.Gly57Ala | missense_variant | 0.25 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
clpC1 | 4038857 | c.1848C>A | synonymous_variant | 0.16 |
clpC1 | 4039363 | p.Ala448Pro | missense_variant | 0.31 |
clpC1 | 4039932 | p.Gly258Val | missense_variant | 0.37 |
embC | 4239842 | c.-21C>A | upstream_gene_variant | 0.21 |
embC | 4241539 | c.1677T>C | synonymous_variant | 0.99 |
embC | 4242476 | p.Pro872Ala | missense_variant | 0.23 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242822 | p.Val987Gly | missense_variant | 0.35 |
ubiA | 4269529 | p.Ala102Gly | missense_variant | 0.18 |
ethA | 4327672 | c.-199G>A | upstream_gene_variant | 0.23 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |