Run ID: SRR6045335
Sample name:
Date: 04-04-2023 11:57:21
Number of reads: 1967135
Percentage reads mapped: 84.62
Strain: lineage4.1.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.3 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777081 | p.Lys467Arg | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472582 | n.737G>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472647 | n.802C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472660 | n.815T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472686 | n.841G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472687 | n.842_843insC | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472692 | n.847T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472707 | n.862A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472714 | n.869A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472790 | n.945T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475673 | n.2016T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475686 | n.2029C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475696 | n.2039T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475699 | n.2042C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475715 | n.2058G>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475751 | n.2094C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475756 | n.2099T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475760 | n.2103C>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475762 | n.2105G>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475777 | n.2120A>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476379 | n.2722G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223233 | c.-69G>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4241539 | c.1677T>C | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
aftB | 4267893 | p.Ile315Thr | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |