lineage | Count |
---|---|
lineage4.1.2.1 | 17 |
157 | |
lineage2.2.1.2 | 2 |
lineage4.4.1.1 | 3 |
lineage4.3.3 | 1 |
lineage4 | 47 |
lineage4.9 | 28 |
lineage2.2.1 | 21 |
lineage2.2.1.1 | 3 |
lineage2.2 | 7 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage2 | 3 |
lineage4.5 | 3 |
La1.8.1 | 5 |
lineage4.2;La1.7 | 1 |
lineage4.9;La3 | 1 |
lineage1.1.1.1 | 1 |
lineage4.1.1.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1 | 3 |
lineage4.1.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4.8 | 3 |
lineage4.1.1.3 | 2 |
lineage4;lineage1.1.2 | 1 |
lineage4.8;La3 | 2 |
lineage4.1;lineage1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.7 | 2 |
lineage3 | 5 |
lineage4.1.3 | 3 |
lineage4.2.1 | 1 |
lineage4.6.2.2 | 5 |
lineage5.2 | 2 |
lineage1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.4.2 | 1 |
La1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 2 |
lineage1.1.2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3.4.2 | 2 |
lineage4.8;lineage4.1 | 2 |
lineage6 | 2 |
lineage6.3.1 | 1 |
spoligotype | Count |
---|---|
None | 357 |
ID | Drug resistance | Lineage | Country iso2 | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173363 | HR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173400 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR19303884 | HR-TB | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR1640750 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR19304036 | HR-TB | None | SRR8692790 | RR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR8692905 | HR-TB | None | SRR8692882 | HR-TB | lineage4.9 | None | SRR8692887 | Other | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26399491 | Sensitive | lineage1.1.1.1 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR3675455 | Sensitive | lineage4 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675482 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675229 | Other | lineage4 | None | SRR3675222 | Other | None | SRR3675311 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | SRR3675279 | Other | None | SRR3675522 | Other | None | SRR3675387 | Sensitive | None | SRR3675501 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | ERR4816999 | Other | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675550 | Other | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | SRR4035789 | HR-TB | lineage4.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5341418 | Other | None | ERR2514692 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341302 | HR-TB | None | SRR5341333 | HR-TB | None | ERR2515228 | Other | lineage2.2.1 | None | ERR2693230 | Other | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | SRR6045526 | HR-TB | None | SRR5535691 | MDR-TB | lineage4.1.3 | None | ERR2693257 | Other | None | SRR5535933 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044855 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045233 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6045399 | Other | None | ERR4830353 | Other | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046397 | Other | None | SRR6046460 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046514 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR3077978 | Other | lineage1.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6982365 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | ERR294248 | HR-TB | None | ERR5311090 | HR-TB | None | ERR502532 | HR-TB | None | SRR8217918 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR5311081 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | SRR7496523 | Other | lineage4.7 | None | ERR323041 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323043 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR11465025 | Other | lineage4.1.1.3 | None | DRR188519 | Other | lineage4.4.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1034652 | Other | None | ERR323115 | Sensitive | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR363426 | Sensitive | lineage4 | None | ERR3283058 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797036 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797044 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797061 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797069 | Other | None | ERR3797086 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4178226 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR4187685 | Other | La1.8.1 | None | ERR4407463 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4188395 | Other | La1.8.1 | None | ERR4798431 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769521 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797474 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811022 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5336148 | Other | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4812155 | Sensitive | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR702404 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736874 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9119669 | HR-TB | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10808399 | Sensitive | lineage4 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None |
---|