Rv3793 - c.1686T>C
Drug resistance types
3 Sensitive
3 RR-TB
30 HR-TB
10 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
89 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9 | 17 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1 | 9 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage5.2 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage4.1 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| 16 | |
| lineage2.1;lineage4.9 | 14 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage4.8 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4 | 3 |
| lineage3 | 2 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.1 | 7 |
| lineage4.6.2.2 | 1 |
| La1.2.BCG | 1 |
| lineage2.2 | 3 |
| lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.7 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| M.canetti;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 137 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR9786440 | Other | lineage4.1 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675214 | Other | lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR7496517 | Other | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR1172728 | RR-TB | La3 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | ERR9786843 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR4817060 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786604 | Other | None | SRR3675457 | Other | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR6045053 | Other | lineage4 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR3283044 | Other | lineage4 | None | ERR9117709 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR387051 | Other | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046046 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6789626 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | SRR3675248 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4799513 | HR-TB | lineage2.2 | None |
|---|
