Rv3696c - c.336T>C
Drug resistance types
18 Sensitive
4 RR-TB
23 HR-TB
15 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
91 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;lineage4.9;lineage7 | 2 |
| M.canetti | 65 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.9 | 18 |
| M.canetti;lineage4.9 | 3 |
| La3;M.canetti | 11 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 5 |
| La3;lineage4.9 | 1 |
| La1.7;lineage4.9 | 7 |
| La2;lineage2.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.1.3 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.1.1.1 | 1 |
| 1 | |
| La1.2.BCG | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage2.2.1 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7 | 1 |
| La1;lineage4.1.2 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La2;M.canetti | 1 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 152 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | SRR5818661 | Other | M.canetti | dj | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR473332 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR10177261 | Other | M.canetti | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR28170812 | Other | M.canetti | None | SRR18289196 | Other | M.canetti | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR3597003 | Other | M.canetti | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR16058668 | Other | M.canetti | None | ERR266123 | Other | M.canetti | None | ERR926165 | Other | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR3597005 | Other | M.canetti | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | SRR10522783 | Sensitive | M.canetti | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR313116 | Other | M.canetti | None | SRR5818614 | Other | M.canetti | dj | ERR1336825 | Sensitive | La3;M.canetti | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR926158 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR10177263 | Other | M.canetti | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5818653 | Other | M.canetti | dj | SRR10177262 | Other | M.canetti | None | ERR4817181 | Other | M.canetti | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR313114 | Other | M.canetti | None | ERR9125475 | Other | M.canetti | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR10177258 | Other | M.canetti | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR6650709 | Other | M.canetti | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR266124 | Other | M.canetti | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR551179 | Sensitive | M.canetti | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9787197 | Other | None | ERR266125 | Other | La3;M.canetti | None | ERR266106 | Other | M.canetti | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR5818567 | Other | M.canetti | dj | ERR266107 | Other | M.canetti | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4815361 | Other | M.canetti | None | ERR736848 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4819927 | Other | M.canetti | None | ERR552307 | Other | M.canetti | None | ERR4821046 | Other | M.canetti | None | ERR313113 | Other | M.canetti | None | ERR3597002 | Other | M.canetti | None | ERR181887 | Other | lineage4.9 | None | ERR266120 | Other | M.canetti | None | SRR24061597 | Sensitive | M.canetti | None | ERR313115 | Other | M.canetti | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR551057 | Other | M.canetti | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4816019 | Other | M.canetti | None | ERR3597007 | Other | M.canetti | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR552305 | Other | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR552306 | Other | M.canetti;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR551180 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR4830353 | HR-TB | La1.7 | None | SRR24061598 | Other | M.canetti | None | ERR266122 | Other | La3;M.canetti | None | ERR551056 | Other | M.canetti | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR5818676 | Other | M.canetti | dj | ERR1043163 | Other | La3;M.canetti | None | SRR10808730 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR266108 | Other | M.canetti | None | SRR10177260 | Other | M.canetti | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5818605 | Other | M.canetti | None | ERR1336826 | Sensitive | La3;M.canetti | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR971389 | Other | lineage4.9 | None | SRR22179528 | Other | M.canetti | None | SRR18289195 | Sensitive | M.canetti | None | ERR3597004 | Sensitive | M.canetti | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR24061600 | Other | M.canetti | None | ERR266109 | Other | M.canetti | None | ERR3597001 | Other | M.canetti | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR552304 | Other | M.canetti | None | ERR266110 | Other | M.canetti | None | ERR551055 | Other | M.canetti | None | ERR266126 | Other | La2;M.canetti | None | SRR10177259 | Other | M.canetti | None | SRR5818652 | Other | M.canetti | dj | SRR5818668 | Other | M.canetti | dj | SRR3675232 | Other | lineage4.1.2.1 | None | ERR9125480 | Other | M.canetti | None | SRR24061599 | Other | M.canetti | None | ERR266121 | Other | M.canetti | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR313117 | Other | M.canetti | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR16058674 | Other | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR9786421 | Other | lineage4.1.2.1 | None |
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