Rv3423c - p.His143Asp
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
37 Sensitive
0 RR-TB
15 HR-TB
3 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti | 38 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9 | 6 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 10 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;M.canetti | 9 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| La2;M.canetti | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1 | 1 |
| lineage3.1.2.2 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| 3 | |
| lineage4.9;lineage6.3 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| lineage4.9;lineage9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 105 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR10177261 | Sensitive | M.canetti | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR266108 | Sensitive | M.canetti | None | SRR6045526 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR266120 | Sensitive | M.canetti | None | SRR5818653 | Sensitive | M.canetti | dj | ERR4816019 | Sensitive | M.canetti | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR10177262 | Sensitive | M.canetti | None | SRR10808730 | Other | lineage4.9 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR266121 | Sensitive | M.canetti | None | SRR24061597 | Sensitive | M.canetti | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR266107 | Other | M.canetti | None | ERR266110 | Other | M.canetti | None | DRR474015 | HR-TB | lineage2.2.1 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR10177259 | Other | M.canetti | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR266106 | Sensitive | M.canetti | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR552305 | Sensitive | M.canetti | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR5818676 | Other | M.canetti | dj | ERR551180 | Sensitive | M.canetti | None | ERR212001 | HR-TB | None | ERR234659 | Other | None | ERR3597003 | Sensitive | M.canetti | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3597005 | Sensitive | M.canetti | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR266123 | Sensitive | M.canetti | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR5818567 | Other | M.canetti | dj | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR5818614 | Sensitive | M.canetti | dj | ERR4815361 | Other | M.canetti | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR551056 | Sensitive | M.canetti | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR18289195 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR551181 | Sensitive | M.canetti | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR266109 | Sensitive | M.canetti | None | SRR10177263 | Sensitive | M.canetti | None | SRR10177258 | Other | M.canetti | None | SRR5818661 | Other | M.canetti | dj | SRR24061598 | Sensitive | M.canetti | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR10177260 | Other | M.canetti | None | ERR1043164 | Other | La3;M.canetti | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR1043163 | Other | La3;M.canetti | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR5818668 | Sensitive | M.canetti | dj | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR551055 | Sensitive | M.canetti | None |
|---|
