Rv1854c - c.1266C>G
Drug resistance types
38 Sensitive
4 RR-TB
37 HR-TB
21 MDR-TB
2 Pre-XDR-TB
1 XDR-TB
82 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 12 |
| M.canetti | 67 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 6 |
| La1.2.BCG | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La3 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 7 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti | 11 |
| M.canetti;lineage4.2 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La2;M.canetti | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.9;lineage6.3 | 3 |
| lineage4.1.3 | 2 |
| lineage2.2.1 | 3 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| 5 | |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.8 | 1 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 185 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173778 | Other | lineage4.9 | None | ERR551179 | Sensitive | M.canetti | None | SRR1196583 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR16058668 | Sensitive | M.canetti | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR266109 | Other | M.canetti | None | ERR266107 | Other | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR552304 | Other | M.canetti | None | ERR266110 | Other | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | ERR551055 | Other | M.canetti | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR313113 | Other | M.canetti | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR313115 | Other | M.canetti | None | ERR551057 | Other | M.canetti | None | ERR266106 | Sensitive | M.canetti | None | ERR313117 | Other | M.canetti | None | ERR4816019 | Other | M.canetti | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196546 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | ERR4817181 | Other | M.canetti | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR313114 | Other | M.canetti | None | ERR176751 | HR-TB | lineage4.9 | None | ERR9125475 | Other | M.canetti | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5818676 | Other | M.canetti | dj | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5818605 | Other | M.canetti | None | SRR1184294 | Other | lineage4.9 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR28170812 | Other | M.canetti | None | SRR18289195 | Sensitive | M.canetti | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR266123 | Sensitive | M.canetti | None | ERR313116 | Sensitive | M.canetti | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3597003 | Other | M.canetti | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR5818567 | Other | M.canetti | dj | SRR6650709 | Sensitive | M.canetti | None | ERR702406 | Other | lineage2.1 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR387051 | RR-TB | lineage4.9 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR552307 | Other | M.canetti | None | SRR10177259 | Other | M.canetti | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4821046 | Other | M.canetti | None | ERR3597002 | Other | M.canetti | None | SRR5818668 | Other | M.canetti | dj | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR10177262 | Other | M.canetti | None | ERR551180 | Sensitive | M.canetti | None | ERR3597007 | Sensitive | M.canetti | None | ERR551181 | Sensitive | M.canetti | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR24061598 | Sensitive | M.canetti | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR551182 | Sensitive | M.canetti | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR10177260 | Other | M.canetti | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR266124 | Other | M.canetti | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR1043164 | Other | La3;M.canetti | None | SRR6046485 | Other | lineage4.9 | None | SRR22179528 | Other | M.canetti | None | ERR234659 | HR-TB | None | ERR212001 | HR-TB | None | ERR266121 | Sensitive | M.canetti | None | SRR24061599 | Sensitive | M.canetti | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4819927 | Sensitive | M.canetti | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR3597004 | Sensitive | M.canetti | None | ERR266125 | Other | La3;M.canetti | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3597001 | Other | M.canetti | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR10522783 | Sensitive | M.canetti | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR266120 | Other | M.canetti | None | ERR502912 | Other | lineage2.2.1 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR5818614 | Other | M.canetti | dj | ERR1336825 | Sensitive | La3;M.canetti | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816999 | Other | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR9125480 | Sensitive | M.canetti | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR16058674 | Other | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | SRR1165699 | Other | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR5818685 | Other | M.canetti | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR10177258 | Other | M.canetti | None | SRR5818661 | Other | M.canetti | dj | ERR552305 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR551056 | Other | M.canetti | None | ERR1043163 | Other | La3;M.canetti | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR10177261 | Other | M.canetti | None | SRR7535086 | Other | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR18289196 | Other | M.canetti | None | ERR9786604 | Other | None | SRR24061597 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR3597005 | Sensitive | M.canetti | None |
|---|
