Rv1854c - c.1266C>G


Drug resistance types
59 Sensitive 2 RR-TB 40 HR-TB 11 MDR-TB 2 Pre-XDR-TB 1 XDR-TB 74 Other
lineage Counts
lineage Count
M.canetti 68
lineage2.2 1
La3;lineage2.1;lineage4.9;lineage6.3 2
lineage2.1;lineage4.9 7
La3;M.canetti 11
lineage4.9 12
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 2
lineage4.9;lineage6.3 4
6
M.canetti;lineage2.1;lineage6.3 2
M.canetti;lineage2.1;lineage4.9 6
lineage4.6.2.2 1
M.canetti;lineage4.2 1
lineage2.1;lineage4.9;lineage6.3 5
lineage2.2.1 3
lineage2.1 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage3.1;lineage9 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2.1;lineage4.9 3
La1.6;La3;M.canetti;lineage4.2.2 1
La1.6;La3;lineage4.6.4;lineage4.9 1
lineage4 1
lineage3.1.2.2 1
lineage4.1.2.1 3
lineage4.1.3 2
La3 2
La3;lineage4.9 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
M.canetti;lineage2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9 1
La2;M.canetti 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9.1 1
lineage4.8 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
M.canetti;lineage4.9 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 1
lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.1.1.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.2.BCG 1
La1.7;M.canetti;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 189
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR551056 Sensitive M.canetti None
ERR266110 Other M.canetti None
ERR266108 Sensitive M.canetti None
ERR4816585 Other lineage2.2 None
SRR10522783 Sensitive M.canetti None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR3597006 Other La3;M.canetti None
SRR1196546 Other lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR18289196 Sensitive M.canetti None
SRR18289195 Sensitive M.canetti None
SRR5818652 Sensitive M.canetti dj
SRR5818653 Sensitive M.canetti dj
SRR7535086 Other None
ERR9125475 Other M.canetti None
ERR4816019 Sensitive M.canetti None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR13265748 Other lineage4.9;lineage6.3 None
SRR10177258 Other M.canetti None
ERR7451301 Sensitive M.canetti None
ERR736867 Other lineage2.1;lineage4.9 None
ERR1336821 Sensitive La3;M.canetti None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR266124 Other M.canetti None
ERR9786645 Other lineage4.6.2.2 None
SRR28170812 Sensitive M.canetti None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR10177262 Sensitive M.canetti None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
ERR4817181 Sensitive M.canetti None
SRR12142341 HR-TB lineage2.1 None
ERR3597003 Sensitive M.canetti None
SRR22179528 Sensitive M.canetti None
ERR313114 Sensitive M.canetti None
SRR5818668 Sensitive M.canetti dj
SRR5818685 Sensitive M.canetti None
ERR9786604 Other None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR3597005 Sensitive M.canetti None
ERR313116 Sensitive M.canetti None
SRR1173778 Other lineage4.9 None
ERR4819927 Sensitive M.canetti None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR266125 Other La3;M.canetti None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3597001 Sensitive M.canetti None
ERR1336822 Sensitive M.canetti None
ERR552304 Sensitive M.canetti None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4815361 Other M.canetti None
SRR6650709 Sensitive M.canetti None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR10177259 Other M.canetti None
ERR313113 Other M.canetti None
ERR2027263 Other lineage4 None
SRR6046133 HR-TB lineage4.9 None
ERR1336825 Sensitive La3;M.canetti None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR551057 Other M.canetti None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4820854 Other lineage4.1.2.1 None
ERR266120 Sensitive M.canetti None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1165699 Other lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR1336820 Sensitive La3;M.canetti None
SRR1172728 RR-TB La3 None
ERR176643 Other La3;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR10177263 Sensitive M.canetti None
SRR5818661 Other M.canetti dj
ERR552305 Sensitive M.canetti None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR176751 Other lineage4.9 None
SRR5818676 Other M.canetti dj
SRR24061598 Sensitive M.canetti None
ERR551182 Sensitive M.canetti None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR10177260 Other M.canetti None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR1043164 Other La3;M.canetti None
SRR5818605 Other M.canetti None
SRR1184294 Other lineage4.9 None
ERR1336826 Sensitive La3;M.canetti None
ERR551180 Sensitive M.canetti None
ERR323041 HR-TB M.canetti;lineage2.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR212001 HR-TB None
ERR502889 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR266121 Sensitive M.canetti None
SRR24061597 Sensitive M.canetti None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR266122 Sensitive La3;M.canetti None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR266126 Sensitive La2;M.canetti None
ERR551179 Sensitive M.canetti None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR387051 Other lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR10522763 Sensitive M.canetti None
ERR4817735 Other lineage4.8 None
ERR266107 Other M.canetti None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1196494 MDR-TB None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR3597002 Other M.canetti None
ERR552307 Sensitive M.canetti None
ERR313115 Other M.canetti None
ERR4816999 Other None
ERR266106 Sensitive M.canetti None
ERR9125480 Sensitive M.canetti None
ERR313117 Other M.canetti None
SRR29056248 Sensitive M.canetti None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1035162 Other M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR3597007 Sensitive M.canetti None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR551181 Sensitive M.canetti None
SRR16058674 Other M.canetti None
ERR266109 Sensitive M.canetti None
ERR4816466 HR-TB lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
SRR1172234 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR6046485 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR502912 Other lineage2.2.1 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR1043163 Other La3;M.canetti None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR234659 Other None
ERR1336823 Sensitive La3;M.canetti None
ERR4819781 Other lineage2.2.1 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
SRR24061599 Sensitive M.canetti None
SRR24061600 Sensitive M.canetti None
ERR502524 HR-TB lineage4.9;lineage6.3 None
ERR266123 Sensitive M.canetti None
SRR1196583 Other lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR4821046 Sensitive M.canetti None
ERR3283024 Other La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3597004 Sensitive M.canetti None
SRR5818567 Other M.canetti dj
SRR16058668 Sensitive M.canetti None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR551055 Sensitive M.canetti None
SRR5818614 Sensitive M.canetti dj
SRR10177261 Sensitive M.canetti None
ERR1336824 Sensitive La3;M.canetti None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None