Rv0668 - c.-111G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
42 Sensitive
2 RR-TB
34 HR-TB
6 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 46 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti | 13 |
| La1.7;lineage4.9 | 5 |
| La3;M.canetti | 8 |
| lineage4.3.4 | 2 |
| lineage4.3.4.1 | 1 |
| lineage4.8 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1 | 4 |
| La3;lineage4.9 | 4 |
| lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.3.2.1 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| La2;M.canetti | 1 |
| La2;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 114 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675522 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | ERR1336822 | Sensitive | M.canetti | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR551182 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR4798099 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR473332 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR551180 | Sensitive | M.canetti | None | ERR736831 | Other | lineage4.9 | None | SAMEA2533757 | Sensitive | M.canetti | None | ERR1043163 | Other | La3;M.canetti | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR926165 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3597004 | Sensitive | M.canetti | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR551181 | Sensitive | M.canetti | None | ERR212138 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR1043164 | Other | La3;M.canetti | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR24061597 | Sensitive | M.canetti | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR266125 | Other | M.canetti | None | SRR10522783 | Sensitive | M.canetti | None | ERR736848 | Other | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR18289195 | Sensitive | M.canetti | None | ERR266120 | Sensitive | M.canetti | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR1336826 | Sensitive | La3;M.canetti | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None |
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