Rv0668 - c.876C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
51 Sensitive
4 RR-TB
15 HR-TB
3 MDR-TB
0 Pre-XDR-TB
1 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage6.1.3 | 1 |
| lineage4.9 | 32 |
| lineage4.8 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2.1 | 4 |
| M.canetti | 13 |
| lineage4 | 1 |
| La3;M.canetti | 8 |
| M.canetti;lineage4.9 | 1 |
| La1.8.1 | 2 |
| lineage4.9;lineage7 | 4 |
| La1.7;lineage4.9 | 5 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La2;M.canetti | 1 |
| lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.7 | 1 |
| 1 | |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage3.1;lineage9 | 1 |
| lineage4.4.1.1.1 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 99 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9787153 | Other | lineage6.1.3 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR551181 | Sensitive | M.canetti | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR1336820 | Sensitive | La3;M.canetti | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR5216831 | Other | La1.8.1 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR1336821 | Sensitive | La3;M.canetti | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SAMEA2533757 | Sensitive | M.canetti | None | ERR1043163 | Other | La3;M.canetti | None | SRR10808730 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR1336823 | Sensitive | La3;M.canetti | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | SRR1180250 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR1336822 | Sensitive | M.canetti | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR10522783 | Sensitive | M.canetti | None | ERR564372 | Other | La1.8.1 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | SRR6046492 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | SRR3675582 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR18289195 | Sensitive | M.canetti | None | ERR266120 | Sensitive | M.canetti | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR551180 | Sensitive | M.canetti | None | SRR5341456 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR24061597 | Sensitive | M.canetti | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR10522763 | Sensitive | M.canetti | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR266125 | Other | M.canetti | None | ERR3597004 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR551179 | Sensitive | M.canetti | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR1336824 | Sensitive | La3;M.canetti | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR400529 | Other | lineage3 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None |
|---|
