Rv3596c - c.885T>C
Drug resistance types
67 Sensitive
13 RR-TB
50 HR-TB
29 MDR-TB
8 Pre-XDR-TB
1 XDR-TB
100 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 51 |
| M.canetti | 65 |
| lineage4.6.2.2 | 2 |
| lineage4.9;lineage7 | 4 |
| La3;lineage4.9 | 4 |
| lineage2.2.1 | 17 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La2;M.canetti | 1 |
| 5 | |
| lineage2.2.1.2;lineage7 | 1 |
| lineage6.1.1 | 2 |
| lineage2.2 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.4.2 | 1 |
| lineage3 | 6 |
| La3;M.canetti | 11 |
| La1.6;La3;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 4 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage6.3 | 3 |
| La2;lineage4.9;lineage9 | 1 |
| lineage5.2 | 2 |
| lineage4.3.4.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2;lineage4 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage2.2.2 | 2 |
| lineage2.2.1.1 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 3 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4 | 2 |
| La2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.8 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1.1.3.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.2;La1.8.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2.1 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.2.BCG | 1 |
| La1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 268 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR3283055 | HR-TB | lineage4.9 | None | ERR3597003 | Sensitive | M.canetti | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR28119827 | Other | La3;lineage4.9 | None | ERR313114 | Sensitive | M.canetti | None | SRR5818668 | Sensitive | M.canetti | dj | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR6045832 | Other | lineage4.9 | None | ERR266126 | Sensitive | La2;M.canetti | None | ERR4796577 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR551179 | Sensitive | M.canetti | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR3597001 | Sensitive | M.canetti | None | ERR9787014 | Other | lineage6.1.1 | None | ERR11252736 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR3597004 | Sensitive | M.canetti | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR16058668 | Sensitive | M.canetti | None | SRR18002974 | Other | lineage2.2.1 | None | ERR266107 | Other | M.canetti | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR551055 | Sensitive | M.canetti | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4815361 | Other | M.canetti | None | SRR6650709 | Sensitive | M.canetti | None | SRR6046046 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR9896144 | Other | lineage3 | None | SRR10177261 | Sensitive | M.canetti | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR1336824 | Sensitive | La3;M.canetti | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR266110 | Other | M.canetti | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10522783 | Sensitive | M.canetti | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR1336825 | Sensitive | La3;M.canetti | None | ERR4816852 | Other | lineage4.9 | None | ERR3597006 | Other | La3;M.canetti | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | SRR5818653 | Sensitive | M.canetti | dj | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR551181 | Sensitive | M.canetti | None | SRR16058674 | Other | M.canetti | None | ERR1336820 | Sensitive | La3;M.canetti | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR4816019 | Sensitive | M.canetti | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR266109 | Sensitive | M.canetti | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | SRR10177258 | Other | M.canetti | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR552305 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | ERR1336821 | Sensitive | La3;M.canetti | None | ERR3799304 | Other | lineage6.1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR10177260 | Other | M.canetti | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6044952 | Other | lineage4.9 | None | SRR24061597 | Sensitive | M.canetti | None | ERR867570 | RR-TB | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3597005 | Sensitive | M.canetti | None | ERR3283042 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR266123 | Sensitive | M.canetti | None | ERR752229 | Other | lineage4.5 | None | ERR1336822 | Sensitive | M.canetti | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR552304 | Sensitive | M.canetti | None | ERR387051 | Other | lineage4.9 | None | SRR5818567 | Other | M.canetti | dj | SRR10522763 | Sensitive | M.canetti | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5818614 | Sensitive | M.canetti | dj | SRR6045053 | Other | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR3275709 | HR-TB | lineage3 | nl | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | SRR10177259 | Other | M.canetti | None | ERR4799025 | Other | lineage4.8 | None | ERR3597002 | Other | M.canetti | None | SRR5341330 | Other | lineage4.9 | None | ERR313115 | Other | M.canetti | None | ERR4798504 | RR-TB | lineage3 | None | ERR9125480 | Sensitive | M.canetti | None | ERR313117 | Other | M.canetti | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR18289195 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | ERR3283032 | Other | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR14164739 | Other | lineage4.3.2 | None | ERR9125475 | Other | M.canetti | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4769493 | Other | lineage4.9 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR14164434 | Sensitive | lineage4.3.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR24061598 | Sensitive | M.canetti | None | ERR551182 | Sensitive | M.canetti | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR266124 | Other | M.canetti | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1043164 | Other | La3;M.canetti | None | SRR1180147 | Other | lineage2.2.1.1 | None | ERR1336826 | Sensitive | La3;M.canetti | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR10177262 | Sensitive | M.canetti | None | ERR4817069 | RR-TB | None | ERR1043163 | Other | La3;M.canetti | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR22179528 | Sensitive | M.canetti | None | ERR1336823 | Sensitive | La3;M.canetti | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR266121 | Sensitive | M.canetti | None | SRR6046878 | Other | lineage4.9 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR266122 | Sensitive | La3;M.canetti | None | SRR6046141 | Other | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675586 | Other | M.canetti;lineage4.6.4;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR313116 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR266125 | Other | La3;M.canetti | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR4821046 | Sensitive | M.canetti | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046210 | Other | lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR176741 | Other | lineage4.9 | None | ERR551056 | Sensitive | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR6046492 | Other | lineage4.9 | None | ERR313113 | Other | M.canetti | None | SRR6045526 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | ERR552307 | Sensitive | M.canetti | None | SRR6045347 | Other | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR551057 | Other | M.canetti | None | ERR266106 | Sensitive | M.canetti | None | SRR3675248 | Other | lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR266120 | Sensitive | M.canetti | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR3597007 | Sensitive | M.canetti | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR551180 | Sensitive | M.canetti | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR14164538 | Sensitive | lineage4.3.2 | None | SRR8692905 | Sensitive | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR11776004 | MDR-TB | lineage4.3.2 | None | ERR2514692 | Other | None | ERR234659 | Other | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4817181 | Sensitive | M.canetti | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None |
|---|
