lineage | Count |
---|---|
lineage4.9 | 30 |
109 | |
lineage4 | 10 |
lineage2.2.1 | 20 |
lineage5.2 | 2 |
lineage2.2.2 | 2 |
lineage4.2.1.1 | 1 |
lineage4.3.4.2.1 | 1 |
La2 | 1 |
lineage4.8 | 5 |
La1.8.1 | 1 |
lineage4.1.1 | 1 |
lineage6.1.1 | 2 |
lineage4.6.2.2 | 2 |
lineage4.9;La1.3 | 1 |
La1.2 | 1 |
lineage3.1.2 | 1 |
La1 | 1 |
lineage3 | 8 |
lineage2.2 | 3 |
lineage4.5 | 1 |
La3 | 1 |
lineage2.2.1.1 | 4 |
lineage4.3.2 | 3 |
lineage4.3.4.1 | 1 |
lineage4.4.2 | 2 |
lineage7;lineage2.2.1.2 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.3 | 2 |
lineage4.1 | 1 |
lineage4.1.1.3.1 | 1 |
spoligotype | Count |
---|---|
None | 221 |
ID | Drug resistance | Lineage | Country iso2 | ERR2660539 | Other | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR5818605 | Sensitive | None | SRR5818685 | Sensitive | None | ERR4821214 | RR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6046152 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045399 | Other | None | SRR6045327 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046492 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046397 | Other | None | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046839 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046878 | HR-TB | lineage4 | None | ERR294266 | HR-TB | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831727 | MDR-TB | lineage2.2.2 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR323039 | HR-TB | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR323053 | HR-TB | None | ERR3597001 | Sensitive | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1034652 | Other | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3597003 | Sensitive | None | ERR067681 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283024 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3597005 | Sensitive | None | ERR3597002 | Sensitive | None | ERR3597007 | Sensitive | None | ERR3597006 | Sensitive | None | ERR3797015 | HR-TB | None | ERR3994095 | HR-TB | lineage4.1.1 | None | ERR3797014 | Other | None | ERR3797046 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4796577 | MDR-TB | None | ERR4769472 | Other | lineage4.9 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4798504 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR702404 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736865 | HR-TB | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR7451301 | Sensitive | None | ERR7451300 | Sensitive | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR752229 | Other | lineage4.5 | None | ERR9125480 | Sensitive | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9896144 | Other | lineage3 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173281 | RR-TB | lineage3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1174897 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR14164739 | Other | lineage4.3.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14164434 | Sensitive | lineage4.3.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR14164538 | Sensitive | lineage4.3.2 | None | SRR17658565 | Other | lineage3 | None | SRR16058668 | Sensitive | None | SRR14782405 | HR-TB | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR22179528 | Sensitive | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR24061597 | Sensitive | None | SRR24061600 | Sensitive | None | SRR24061598 | Sensitive | None | SRR24061599 | Sensitive | None | SRR8692790 | RR-TB | lineage4 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR8692905 | HR-TB | None | SRR8692822 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692887 | Other | None | SRR3675270 | HR-TB | None | ERR176751 | HR-TB | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR158583 | HR-TB | None | ERR4815361 | Sensitive | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176740 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR4815556 | RR-TB | lineage3 | None | ERR2228942 | Sensitive | lineage4.8 | None | SRR3675456 | HR-TB | None | ERR4816019 | Sensitive | None | SRR3675510 | Other | None | ERR212033 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | ERR4817069 | RR-TB | None | ERR4816466 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816470 | Other | lineage3 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | None | ERR4817181 | Sensitive | None | ERR4816852 | Other | lineage4.9 | None | ERR4816656 | HR-TB | None | SRR5818653 | Sensitive | dj | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | SRR5818661 | Sensitive | dj | SRR5818614 | Sensitive | dj | SRR5818668 | Sensitive | dj | SRR5818652 | Sensitive | dj | SRR5818567 | Sensitive | dj | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818929 | HR-TB | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR3275709 | HR-TB | lineage3 | nl | ERR4820705 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819927 | Sensitive | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR2514692 | Other | None | SRR5341330 | HR-TB | None | ERR2693231 | Other | None | ERR2693232 | Other | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR6045526 | HR-TB | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821046 | Sensitive | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR5341470 | HR-TB | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None |
---|