EBG00000313325 - n.51T>C
Drug resistance types
73 Sensitive
15 RR-TB
17 HR-TB
11 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
88 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 18 |
| lineage4.6.1 | 4 |
| lineage3 | 9 |
| lineage4.6.1.1 | 9 |
| lineage4.8;lineage4.2.1 | 1 |
| lineage4.3.3 | 5 |
| lineage4.3.4.1 | 3 |
| lineage4.9 | 54 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4 | 12 |
| 11 | |
| lineage4.4.1.1 | 2 |
| lineage4.1.4 | 1 |
| lineage4.6.5 | 1 |
| La1.8.1 | 9 |
| lineage4.9;La1.8 | 1 |
| lineage4.1.2.1 | 4 |
| lineage4.2.2.2;lineage3 | 1 |
| La1.8.2 | 2 |
| La1.2 | 3 |
| lineage4.3.4.2.1 | 3 |
| lineage4.8 | 10 |
| lineage1.2.2.2 | 1 |
| lineage4.1.2 | 4 |
| lineage4.6.1.2;lineage4.4.1.1 | 1 |
| lineage4.9;lineage2.2 | 1 |
| lineage4.3.2.1 | 8 |
| lineage2.2 | 3 |
| lineage4.9;lineage1.1 | 1 |
| lineage1.2.2 | 1 |
| lineage1.1 | 1 |
| lineage4.9;lineage4.4.2 | 1 |
| lineage2 | 1 |
| La1.7.1 | 1 |
| lineage3.1.1 | 2 |
| lineage4.1.1 | 6 |
| lineage4.9.1 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.1.1.3.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4;lineage2 | 1 |
| lineage4.4 | 1 |
| lineage4;lineage2.2.1 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 209 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR027451 | Pre-XDR-TB | lineage2.2.1 | ru | SRR7535054 | Sensitive | lineage4.6.1 | None | SRR7535074 | Sensitive | lineage3 | None | SRR7535079 | Sensitive | lineage4.6.1.1 | None | SRR7645808 | HR-TB | lineage4.8;lineage4.2.1 | None | SRR7535053 | Sensitive | lineage3 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796599 | Other | lineage4 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796578 | Other | lineage2.2.1 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR10796597 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796630 | HR-TB | None | ERR10796625 | RR-TB | lineage4.4.1.1 | None | ERR10796627 | Other | lineage4 | None | ERR3324351 | MDR-TB | lineage4.1.4 | None | ERR10796634 | Other | lineage4 | None | ERR11043121 | MDR-TB | lineage4.6.5 | None | ERR405191 | Other | lineage4.9 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR4188187 | Other | La1.8.1 | None | ERR4132447 | HR-TB | lineage4 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR4627376 | Other | La1.8.1 | None | ERR4188255 | Other | lineage4.9;La1.8 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4407530 | HR-TB | lineage4.1.2.1 | None | ERR4596929 | MDR-TB | lineage4.2.2.2;lineage3 | None | ERR6149874 | Other | La1.8.2 | None | ERR4769505 | Other | lineage4.9 | None | ERR4627379 | Other | La1.8.1 | None | ERR473278 | Sensitive | lineage4.9 | None | ERR5908229 | Sensitive | lineage4.3.3 | None | ERR6140667 | Other | La1.8.2 | None | ERR6201802 | Other | La1.2 | None | ERR6198389 | Other | La1.2 | None | ERR736816 | Other | lineage4.9 | None | ERR6201843 | Other | La1.2 | None | ERR779680 | Sensitive | lineage4.3.4.2.1 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR7801177 | Other | lineage4.3.4.2.1 | None | ERR9117747 | HR-TB | lineage4.8 | None | ERR7801178 | Other | lineage4.3.4.2.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9119101 | Sensitive | lineage4.3.3 | None | SRR1181085 | Sensitive | lineage4.1.2 | None | SRR1049031 | HR-TB | lineage4.9 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1140691 | HR-TB | lineage4.6.1.2;lineage4.4.1.1 | None | SRR1140723 | Sensitive | lineage4.6.1.1 | None | SRR1019127 | Other | lineage4.9;lineage2.2 | None | SRR1049030 | Pre-XDR-TB | lineage4.9 | None | SRR1062895 | Other | lineage4.6.1.1 | None | SRR1140627 | Other | lineage4.6.1 | None | SRR1140677 | MDR-TB | lineage4.6.1 | None | SRR1140927 | Sensitive | lineage4.3.2.1 | None | SRR1172808 | Other | lineage4.9 | None | SRR1173521 | HR-TB | lineage4.9 | None | SRR1181161 | Other | lineage4.9 | None | SRR1181136 | Sensitive | lineage2.2 | None | SRR1181250 | Other | lineage4.9 | None | SRR1181242 | Sensitive | lineage4.1.2 | None | SRR1181319 | Other | lineage2.2.1 | None | SRR1183080 | RR-TB | lineage4.9 | None | SRR12199400 | HR-TB | lineage4.9;lineage1.1 | None | SRR12199442 | HR-TB | lineage1.2.2 | None | SRR12199472 | Sensitive | lineage1.1 | None | SRR12199468 | Sensitive | lineage4.9;lineage4.4.2 | None | SRR124453 | HR-TB | None | SRR124452 | HR-TB | lineage2 | None | SRR124451 | HR-TB | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR1792247 | Other | La1.7.1 | None | SRR12882020 | Other | lineage3.1.1 | None | SRR1791940 | Other | La1.8.1 | None | SRR2101617 | Other | lineage4.1.1 | None | SRR2101505 | MDR-TB | lineage4.9.1 | None | SRR2101685 | Sensitive | lineage4.9 | None | SRR21685367 | MDR-TB | lineage2.2.1 | None | SRR21675637 | Sensitive | lineage4.3.3 | None | SRR2101684 | Other | lineage2.2.1.1 | None | SRR21728339 | Other | lineage3 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175227 | Pre-XDR-TB | lineage3 | None | ERR1198988 | Sensitive | lineage4.6.1.1 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02381005 | Other | lineage4.6.1.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR2229031 | Other | lineage4.9 | None | ERR1199039 | Sensitive | lineage4.6.1 | None | ERR2229033 | Other | lineage4.8 | None | ERR2229336 | Other | lineage4.8 | None | ERR2229780 | Other | lineage4.9 | None | ERR1199021 | Other | lineage4.6.1.1 | None | ERR2228822 | Other | lineage4.9 | None | ERR2229358 | Other | lineage4.8 | None | SRR4033434 | Sensitive | lineage4.3.2.1 | None | SRR4033203 | Sensitive | lineage4.9 | None | SRR4034391 | MDR-TB | lineage4.1.2.1 | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228874 | Other | lineage4 | None | ERR2228859 | RR-TB | lineage4 | None | ERR2228873 | Other | lineage4.8 | None | SRR4034769 | Other | lineage4.1.1 | None | ERR2228888 | Other | lineage4.8 | None | ERR2446433 | Other | lineage4.1.2.1 | None | ERR1199007 | Sensitive | lineage4.6.1.1 | None | ERR1199001 | Sensitive | lineage4.6.1.1 | None | ERR1199009 | Sensitive | lineage4.6.1.1 | None | ERR245790 | Sensitive | None | SRR5007165 | MDR-TB | lineage3 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5266548 | MDR-TB | lineage2.2.1 | ru | SAMN02585942 | Sensitive | lineage4.1.2 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SAMN02350456 | Sensitive | lineage4.3.2.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6044830 | Other | lineage4.9 | None | SRR6044925 | Sensitive | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6046015 | Other | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045045 | Other | lineage2.2.1 | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6045289 | Other | None | SRR6045379 | Other | None | ERR2851371 | Other | lineage4.9 | None | SRR6046281 | Other | lineage4.9 | None | ERR502472 | Other | lineage4.6.2.2 | None | SRR6397727 | Other | lineage4.2.1.1 | None | SRR6046743 | Other | lineage3 | None | SRR6046815 | Other | lineage3 | None | SRR6982078 | Sensitive | None | ERR502490 | Sensitive | lineage4.9 | None | ERR502483 | Sensitive | lineage4.9 | None | ERR502484 | Sensitive | lineage4.9 | None | ERR502489 | Sensitive | lineage4.9 | None | ERR502482 | Sensitive | lineage4.9 | None | ERR502486 | Sensitive | lineage4.9 | None | ERR502493 | Sensitive | lineage4.9 | None | ERR502492 | Sensitive | lineage4.9 | None | ERR502498 | Sensitive | lineage4.9 | None | SRR6856087 | Sensitive | lineage4 | None | SRR6982138 | Sensitive | lineage4 | None | SRR6982102 | Other | lineage2.2.1 | None | SRR6896162 | Sensitive | lineage4.9 | None | SRR6982104 | Sensitive | lineage2.2.1 | None | SRR6982414 | Sensitive | lineage4.9 | None | SRR6982115 | Sensitive | lineage4 | None | SRR6982139 | Sensitive | lineage4.9 | None | SRR6982178 | Sensitive | lineage2.2 | None | SRR6982418 | Sensitive | lineage4.1.1.3 | None | SRR6785301 | Sensitive | lineage2.2.1 | None | SRR6982510 | Sensitive | lineage4;lineage2 | None | SRR6982195 | RR-TB | lineage4.4 | None | SRR6982448 | Sensitive | lineage4;lineage2.2.1 | None | SRR6982272 | Sensitive | lineage4.9 | None | SRR6982196 | Sensitive | None | SRR6982229 | Sensitive | lineage2.2.1 | None | SRR6982297 | Sensitive | lineage4.1.1 | None | SRR6982362 | Other | lineage4.3.2.1 | None | SRR6981912 | Sensitive | None | SRR6982472 | Sensitive | lineage4.4.1.1 | None | SRR6982471 | Sensitive | lineage2.2.1 | None | SRR6982508 | Sensitive | lineage4.9 | None | SRR6981993 | Other | lineage4.3.2.1 | None | SRR6982035 | Sensitive | lineage4.9 | None | SRR6982385 | Sensitive | lineage4.1.2 | None | SRR6982014 | Other | lineage4.1.1 | None | SRR6982011 | Other | lineage4.1.1 | None | SRR6982048 | HR-TB | lineage4.3.2.1 | None | SRR6982398 | MDR-TB | lineage2.2 | None | SRR6982037 | Sensitive | lineage4.1.1 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | SRR6982058 | HR-TB | lineage2.2.1 | None | SRR6982070 | RR-TB | None | SRR6982075 | Sensitive | lineage3 | None | SRR6855998 | Sensitive | lineage4.9 | None | SRR6982405 | Sensitive | None | SRR6982076 | Sensitive | lineage4.9 | None | SRR6982514 | Sensitive | lineage4.3.3 | None | ERR5162108 | Other | La1.8.1 | None | ERR5162133 | Other | La1.8.1 | None | SRR6982509 | Sensitive | lineage4.3.2.1 | None | SRR7131123 | Other | lineage4.8 | None | SRR6982558 | Other | lineage4.3.4.2 | None | SRR7131053 | Other | lineage2.2.1 | None | SRR7131068 | Other | lineage4.8 | None | SRR8073606 | Other | La1.8.1 | None | SRR7131169 | Other | lineage4.1.2.1 | None | SRR7131122 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7131251 | Other | lineage2.2.1 | None |
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