Run ID: ERR1198988
Sample name:
Date: 15-08-2022 10:05:24
Number of reads: 2240439
Percentage reads mapped: 14.63
Strain: lineage4.6.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 1.0 |
lineage4.6.1.1 | Euro-American | T2-Uganda | RD724 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9286 | p.Ala662Val | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 762836 | c.-534C>G | upstream_gene_variant | 0.21 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416232 | p.Cys372Gly | missense_variant | 0.1 |
embR | 1416259 | c.1089G>C | synonymous_variant | 0.13 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471896 | n.51T>C | non_coding_transcript_exon_variant | 0.76 |
rrs | 1471900 | n.55C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1471914 | n.69A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.63 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472222 | n.377G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472344 | n.499C>T | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472378 | n.533G>T | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 0.72 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 0.68 |
rrs | 1472400 | n.555C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.79 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.77 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.61 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472953 | n.1108G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1473876 | n.219G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1473888 | n.231T>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1473923 | n.266C>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474218 | n.561T>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1474228 | n.571T>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1474269 | n.612C>T | non_coding_transcript_exon_variant | 0.55 |
rrl | 1474275 | n.618T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 0.78 |
rrl | 1474896 | n.1239A>G | non_coding_transcript_exon_variant | 0.56 |
rrl | 1474902 | n.1245T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475363 | n.1706C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475550 | n.1893A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475552 | n.1895G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475554 | n.1897T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475574 | n.1917C>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475703 | n.2046A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1475707 | n.2050T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1475713 | n.2056C>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475716 | n.2059A>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1475747 | n.2090A>G | non_coding_transcript_exon_variant | 0.47 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.48 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.72 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.73 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476135 | n.2478T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.59 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476229 | n.2572C>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.87 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.68 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476573 | n.2916A>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476577 | n.2920T>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476595 | n.2938C>A | non_coding_transcript_exon_variant | 0.22 |
fabG1 | 1673299 | c.-141T>C | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.26 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568631 | p.Val17Phe | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4328329 | c.-856C>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |