Run ID: SRR21240202
Sample name:
Date: 04-04-2023 00:12:00
Number of reads: 869014
Percentage reads mapped: 88.9
Strain: lineage4.4.1.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 0.99 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472668 | n.825_829delGGGTT | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472675 | n.830_831insAGAC | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472680 | n.835C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472682 | n.837T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472683 | n.838T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472687 | n.842A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472689 | n.844C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.21 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3073880 | p.Glu198Lys | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473998 | c.-9G>A | upstream_gene_variant | 1.0 |
fprA | 3473998 | c.-10_-9insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
rpoA | 3877919 | p.Glu197Lys | missense_variant | 1.0 |
embC | 4240146 | p.Ala95Val | missense_variant | 0.1 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245461 | c.2229C>T | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |