EBG00000313339 - n.2885T>C
Drug resistance types
21 Sensitive
31 RR-TB
5 HR-TB
20 MDR-TB
7 Pre-XDR-TB
3 XDR-TB
94 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.3 | 4 |
| lineage2.2.2 | 5 |
| lineage4.9 | 14 |
| lineage2.2.1 | 24 |
| lineage4.2.2 | 1 |
| lineage3 | 21 |
| lineage4.1.1.3 | 2 |
| lineage6 | 1 |
| lineage4.1.1 | 6 |
| lineage4.4.2 | 2 |
| lineage4.1.2.1 | 13 |
| lineage4 | 7 |
| lineage4.2.1 | 2 |
| lineage1.2.1.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.4.1.1 | 9 |
| lineage3.1 | 3 |
| lineage4.6.1.2 | 1 |
| 4 | |
| lineage4.7 | 3 |
| lineage1 | 2 |
| lineage4.1.2 | 3 |
| lineage1.1.3.1 | 4 |
| lineage1.1.1 | 2 |
| lineage4.6.2.2 | 2 |
| lineage3.1.2.1 | 1 |
| lineage3.1.3 | 1 |
| lineage4.2.2.2 | 3 |
| lineage4.3.2 | 2 |
| lineage4.1.1.3.1 | 4 |
| lineage4.8 | 6 |
| lineage4.3.4.2 | 1 |
| La3 | 1 |
| lineage4.3.1.1 | 3 |
| lineage4.3.4.1 | 2 |
| lineage3.1.1 | 3 |
| lineage4.8.2 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.3.1 | 1 |
| lineage3.1.2.2 | 2 |
| lineage1.1.2 | 2 |
| lineage4.6.5 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3 | 1 |
| La1.8.1 | 1 |
| lineage4.4.1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 181 |
Geographic prevalence
Country level data for this variant is available for 23 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002954 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003033 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18213726 | Other | lineage3 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | ERR8025570 | XDR-TB | lineage2.2.2 | None | SRR18913750 | Other | lineage2.2.1 | None | SRR19304094 | Other | lineage6 | None | SRR2101388 | Sensitive | lineage4.1.1 | None | SRR3675474 | Other | lineage4.1.1 | None | ERR9806941 | XDR-TB | lineage2.2.2 | None | ERR4815301 | Other | lineage4.4.2 | None | ERR2446370 | Sensitive | lineage4.1.2.1 | nl | ERR4814312 | Other | lineage4 | None | ERR4815394 | RR-TB | lineage4.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR4814763 | Other | lineage2.2.1 | None | SRR3675261 | Other | lineage1.2.1.1 | None | ERR4815517 | Other | lineage1.2.2.2 | None | ERR4814896 | Other | lineage2.2.1.1 | None | ERR4817526 | Other | lineage4.4.1.1 | gb | ERR4814681 | Other | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4815467 | Other | lineage3 | None | ERR4815534 | Other | lineage4 | None | ERR4815994 | Other | lineage3 | gb | ERR2027257 | Other | lineage4.1.2.1 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2512986 | Other | lineage3 | None | ERR4816310 | HR-TB | lineage4.6.1.2 | None | ERR3275558 | Sensitive | lineage4.1.2.1 | nl | ERR4817131 | Pre-XDR-TB | None | ERR4816610 | RR-TB | lineage4.3.3 | None | ERR4817189 | Other | lineage4.7 | None | ERR4818988 | Other | lineage1 | None | SRR3675565 | Other | lineage3 | None | ERR4816531 | Other | lineage4.1.2 | None | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4816907 | Other | lineage1.1.1 | None | ERR2510590 | Pre-XDR-TB | lineage3.1 | pk | ERR4818726 | Other | lineage4.1.2.1 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | ERR4817964 | RR-TB | lineage4.1.2.1 | gb | ERR4818050 | Other | lineage4.6.2.2 | None | ERR4818126 | RR-TB | lineage1 | None | ERR4819011 | Other | lineage3.1.2.1 | None | ERR2513589 | Other | lineage3.1.3 | None | ERR4818065 | Other | lineage4.1.2.1 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR4818869 | Other | lineage4.2.2.2 | None | SRR5007168 | RR-TB | lineage4.9 | None | ERR3148155 | Sensitive | lineage4.3.2 | None | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | ERR2509886 | RR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007178 | Pre-XDR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR2512849 | RR-TB | lineage1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | ERR2512850 | Sensitive | lineage4.9 | gb | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2446445 | Sensitive | lineage2.2.1 | nl | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4818977 | RR-TB | lineage4.1.2.1 | None | ERR4819096 | Other | lineage4.4.1.1 | None | SRR5152936 | MDR-TB | lineage2.2.1 | None | ERR4817619 | Other | lineage4.1.2.1 | gb | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR2513830 | RR-TB | lineage4.8 | None | ERR4819307 | RR-TB | lineage4 | None | ERR4819368 | Sensitive | lineage4.8 | gb | ERR4820324 | Other | lineage4 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4820397 | Other | lineage4.9 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | ERR2514834 | Other | lineage4.7 | None | ERR4819948 | Other | lineage4.4.1.1 | None | ERR3275465 | Sensitive | lineage2.2.1 | nl | ERR4820184 | MDR-TB | lineage3 | gb | ERR2514943 | Other | lineage4.8 | gb | ERR4820690 | Other | lineage4.1.1 | gb | ERR4820192 | Other | La3 | None | SRR6045485 | Other | lineage4.9 | None | ERR4821796 | Other | lineage4.1.1 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046096 | Other | lineage4.1.2.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR4821214 | RR-TB | None | ERR4822021 | Other | lineage4.8 | gb | ERR4821286 | Other | lineage4.8 | None | ERR4821341 | Other | lineage4.3.4.1 | None | ERR4822261 | RR-TB | lineage2.2.1 | None | ERR4821409 | Other | lineage4.8 | None | ERR4821417 | Other | lineage1.1.3.1 | None | ERR4821492 | HR-TB | lineage3 | None | SRR6045591 | Other | lineage4.1.2.1 | None | SRR6045778 | Other | lineage3.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR5818622 | Sensitive | lineage4.2.2.2 | None | SRR6045805 | Other | lineage4.3.1.1 | None | SRR5818653 | Sensitive | dj | SRR6045876 | Other | lineage3 | gb | SRR6044983 | Other | lineage3.1.1 | None | SRR6044784 | MDR-TB | lineage3 | None | SRR6045928 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6044936 | Other | lineage4 | None | SRR6046159 | Other | lineage4.8.2 | None | SRR6045052 | HR-TB | lineage4.2.1.1 | None | SRR6045056 | Other | lineage2.2.1 | gb | SRR6045164 | Other | lineage4.1.2.1 | None | SRR6045384 | Other | lineage4.1.2 | None | SRR6046020 | Other | lineage3 | None | SRR6045178 | Other | lineage3 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046291 | Other | lineage3 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR2851359 | Other | lineage4.9 | None | ERR323035 | Sensitive | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | SRR6046729 | Other | None | SRR6046815 | Other | lineage3 | None | ERR4831565 | XDR-TB | lineage2.2.2 | None | SRR6832359 | Sensitive | lineage2.2.1 | None | SRR6046508 | Sensitive | lineage3.1.2.2 | gb | SRR6046534 | Other | lineage1.1.2 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6896247 | Sensitive | lineage4.1.1 | None | SRR10315462 | RR-TB | lineage4.3.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7516395 | MDR-TB | lineage2.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | ERR10796552 | Sensitive | lineage4.3.4.1 | None | ERR10796561 | Other | lineage4.3.2 | None | ERR10796564 | Other | lineage4.3.3 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796590 | Other | lineage4.9 | None | ERR10796595 | Other | lineage4.9 | None | ERR9117678 | Other | lineage4.6.2.2 | None | ERR9117740 | Other | lineage3.1.1 | None | ERR9117823 | Other | lineage1.1.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR5162071 | Other | La1.8.1 | None | ERR10796558 | Sensitive | lineage4 | None | ERR10796563 | Other | lineage4.3.3 | None | ERR10796574 | Other | lineage4.9 | None | ERR10796575 | RR-TB | lineage4.9 | None | ERR10796583 | Other | lineage2.2.1 | None | ERR10796593 | RR-TB | lineage4 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR11349155 | MDR-TB | lineage4.4.1.1.1 | None |
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