EBG00000313339 - n.2885T>C
Drug resistance types
10 Sensitive
7 RR-TB
3 HR-TB
19 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3.1 | 1 |
| lineage2.2.1 | 17 |
| lineage4.8.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.3 | 2 |
| lineage4.4.1.1 | 5 |
| lineage2.2.2 | 3 |
| lineage4.9 | 7 |
| lineage4.3.1.1 | 3 |
| lineage3 | 4 |
| lineage4.1.3 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage3.1.2.1 | 3 |
| lineage4.8 | 3 |
| lineage3;lineage4 | 1 |
| lineage4.3.4.1 | 1 |
| M.canetti | 1 |
| lineage1.1.2 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.1.1.3 | 3 |
| lineage4.1.2 | 2 |
| lineage4.3.2 | 1 |
| lineage4.6 | 1 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage4.2.2.2 | 2 |
| lineage4.1.1.1 | 1 |
| lineage6.1.2 | 1 |
| lineage4.2.1 | 2 |
| lineage4.2.2 | 1 |
| lineage3.1 | 1 |
| lineage4.8.1 | 2 |
| lineage1.2.1.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 82 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR867522 | Pre-XDR-TB | lineage2.2.1 | None | SRR5007168 | Other | lineage4.8.2;lineage4.9 | None | SRR11342696 | MDR-TB | lineage4.4.1.1.1 | None | SRR14801652 | HR-TB | lineage4.3.3 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR18002875 | MDR-TB | lineage2.2.2 | None | ERR867571 | Other | lineage4.9 | None | SRR6045422 | Other | lineage4.3.1.1 | None | SRR18002908 | Other | lineage2.2.1 | None | SRR1238557 | Other | lineage4.9 | None | SRR6046291 | Other | lineage3 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | ERR867544 | Other | lineage4.9 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | SRR10315464 | MDR-TB | lineage4.4.1.1 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | ERR10796564 | Other | lineage4.3.3 | None | SRR7069800 | Other | lineage3.1.2.1 | None | SRR3675552 | Other | lineage4.9 | None | SRR7069518 | Other | lineage4.8 | None | ERR867526 | MDR-TB | lineage2.2.1 | None | SRR7070469 | Other | lineage4.3.1.1 | None | SRR3675230 | Other | lineage3;lineage4 | None | ERR867554 | Other | lineage4.3.4.1 | None | SRR1183712 | Other | lineage4.9 | None | ERR867523 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818653 | Sensitive | M.canetti | dj | SRR7069137 | Other | lineage4.8 | None | SRR6046668 | Sensitive | lineage1.1.2 | gb | ERR3276170 | Other | lineage4.1.2.1 | nl | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR4819011 | Other | lineage3.1.2.1 | None | SRR11342664 | MDR-TB | lineage2.2.2 | None | SRR7070195 | Sensitive | lineage3.1.2.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR10315693 | RR-TB | lineage4.1.2 | None | SRR7516395 | MDR-TB | lineage2.2.1 | None | ERR10796561 | Other | lineage4.3.2 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | ERR2446445 | Sensitive | lineage2.2.1 | nl | SRR6044936 | Other | lineage4.6 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR5152936 | MDR-TB | lineage2.2.1 | None | ERR4821119 | Other | lineage4.4.1.1 | None | ERR867538 | Other | lineage4.2.2.2 | None | SRR11342642 | MDR-TB | lineage4.1.1.1 | None | SRR19304094 | Other | lineage6.1.2 | None | ERR3275465 | Sensitive | lineage2.2.1 | nl | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR6044904 | Other | lineage3 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR2510590 | Pre-XDR-TB | lineage3.1 | pk | SRR11342662 | MDR-TB | lineage4.8.1 | None | SRR3675261 | Other | lineage1.2.1.1 | None | SRR1183225 | Other | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | ERR867527 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070223 | HR-TB | lineage3 | None | SRR11342658 | RR-TB | lineage4.1.2 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR18003042 | Other | lineage2.2.1 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6832359 | Sensitive | lineage2.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR18002945 | Other | lineage2.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None |
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