EBG00000313325 - n.604C>T
Drug resistance types
44 Sensitive
23 RR-TB
4 HR-TB
13 MDR-TB
8 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.2.1 | 1 |
| lineage4.8 | 10 |
| 4 | |
| lineage3 | 12 |
| lineage4.1.1 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.1.1.3.1 | 2 |
| lineage4.9 | 59 |
| lineage4.3.4.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.2.1 | 18 |
| lineage4 | 3 |
| lineage4.3.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.4.1.1 | 2 |
| lineage4.3.1.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.4.1 | 1 |
| La1.8.1 | 1 |
| lineage4.2.2 | 1 |
| lineage4.8.1 | 1 |
| lineage6 | 1 |
| lineage4.6 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 1 |
| lineage2 | 1 |
| lineage4.5 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2.1.1 | 2 |
| lineage4.1.1.3 | 1 |
| lineage3.1.2 | 1 |
| lineage1.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 140 |
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR4033447 | HR-TB | lineage4.3.2.1 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR5818426 | Other | None | ERR4817555 | RR-TB | lineage3 | None | ERR4818259 | RR-TB | lineage4.1.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR4818507 | RR-TB | lineage4.1.2.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5818445 | Other | None | ERR4819357 | Other | lineage4.9 | None | ERR4819528 | RR-TB | lineage3 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | ERR4819933 | Other | lineage4.9 | None | ERR4820184 | MDR-TB | lineage3 | gb | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR5818458 | Other | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR6045642 | Other | lineage3.1.2.2 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR5818399 | Sensitive | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818410 | Sensitive | lineage4.9 | None | SRR5818402 | Other | lineage4.9 | None | SRR5818404 | Other | lineage4.9 | None | SRR5818411 | MDR-TB | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818428 | Sensitive | lineage4.9 | None | SRR5818413 | HR-TB | lineage4.9 | None | SRR5818430 | Sensitive | lineage4.9 | None | SRR6045759 | RR-TB | lineage2.2.1 | gb | SRR5818429 | Sensitive | lineage4.9 | None | SRR5818437 | MDR-TB | lineage4.9 | None | SRR5818421 | Sensitive | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR5818462 | Other | lineage4.9 | None | SRR5818469 | Other | lineage4.9 | None | SRR5818435 | Sensitive | lineage4.9 | None | SRR5818449 | MDR-TB | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6044904 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6046020 | Other | lineage3 | None | ERR2843508 | Sensitive | lineage2.2.1 | None | ERR4829039 | RR-TB | lineage4.3.1 | None | ERR4828511 | Sensitive | lineage2.2.1 | vn | ERR2851359 | Other | lineage4.9 | None | SRR6046534 | Other | lineage1.1.2 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR6046852 | MDR-TB | lineage3 | None | SRR6046860 | Other | lineage4.4.1.1 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR3439441 | Other | La1.8.1 | None | DRR034348 | Other | lineage2.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR3806588 | Other | lineage6 | None | ERR4769474 | HR-TB | lineage4 | None | ERR6359070 | Other | lineage4.9 | None | ERR9117788 | Other | lineage3 | None | ERR6359069 | Other | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR9117704 | Other | lineage4.6 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18213721 | Other | lineage4.8 | None | SRR18213726 | Other | lineage3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR19325518 | MDR-TB | lineage2.2.1 | None | SRR22424743 | Pre-XDR-TB | lineage1.1.2 | None | ERR4814661 | Sensitive | lineage3 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | ERR4815471 | Other | lineage4.9 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR5818419 | Sensitive | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4815994 | Other | lineage3 | gb | ERR2027250 | Other | lineage3.1.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None |
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