Rv0667 - c.2097T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
22 Sensitive
5 RR-TB
14 HR-TB
4 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 8 |
| lineage4.9 | 32 |
| lineage2.2.1;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 6 |
| lineage4.1.2.1 | 2 |
| lineage2.2.1 | 5 |
| lineage4.8 | 4 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage2.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7 | 2 |
| lineage4.9;lineage9 | 1 |
| M.canetti;lineage4.9 | 3 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| 1 | |
| La3;lineage4 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 88 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675270 | Other | lineage4.9 | None | ERR387051 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046593 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR926163 | Other | lineage4.9 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4796577 | HR-TB | None | SRR3675222 | Other | La1.7 | None | ERR3797029 | Other | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR3675280 | RR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None |
|---|
