Rv3596c - c.381G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
46 Sensitive
4 RR-TB
41 HR-TB
3 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 75 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage4.4.1.2 | 2 |
| lineage4.3.4.2.1 | 4 |
| 3 | |
| La3;lineage4.9 | 9 |
| lineage6.1.3 | 1 |
| lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4 | 1 |
| lineage2.2.1 | 6 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 2 |
| La1.8.1 | 4 |
| lineage2.1;lineage4.9 | 2 |
| lineage2.2;lineage4.9 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.6.1.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.9.1 | 1 |
| lineage4.3.4 | 1 |
| lineage1.1.2 | 1 |
| La1;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 142 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5162090 | RR-TB | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR29096873 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR1184329 | Other | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR3797087 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR473332 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR1196478 | Other | lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR10808730 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR11466072 | Sensitive | lineage4.3.4.2.1 | None | ERR702405 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR5311077 | Other | La1.8.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | ERR4769493 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7240033 | Other | La1.8.1 | None | ERR176751 | Other | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | ERR387051 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None |
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