Rv0668 - c.3474T>C
Drug resistance types
79 Sensitive
10 RR-TB
87 HR-TB
18 MDR-TB
6 Pre-XDR-TB
2 XDR-TB
91 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 4 |
| La3;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 5 |
| 3 | |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.9 | 140 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4 | 2 |
| lineage4.1.2.1 | 4 |
| lineage4.8.1 | 1 |
| lineage4.3.4.1 | 5 |
| lineage2.2.1 | 16 |
| La1.7;lineage4.9 | 8 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage4.4.1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La3;lineage4.9 | 10 |
| lineage4.8 | 3 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage3 | 5 |
| lineage4.3.2.1 | 1 |
| lineage2.2 | 2 |
| lineage4.9.1 | 2 |
| M.canetti;lineage2.1;lineage3 | 1 |
| La1;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage2.2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.4.2 | 1 |
| lineage1.1.2 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.4 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| La1.2 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage4.5 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9;lineage7 | 2 |
| lineage4.3.3 | 2 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage4.8;lineage4.9 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La2;lineage2.2 | 1 |
| La2;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage3.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.1 | 1 |
| La1.8.1 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 293 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1063896 | Sensitive | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045053 | Other | lineage4 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR11466070 | Sensitive | lineage4.3.4.1 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | ERR13266684 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046593 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR161037 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | SRR5341467 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR29097054 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR5341456 | Other | lineage4.9 | None | ERR2514692 | Other | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | SRR10808730 | Other | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR6046878 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675270 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR5341425 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6045526 | Other | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | SRR29096425 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR6198317 | Other | La1.2 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR9786076 | Sensitive | lineage3 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR176779 | HR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR13432057 | Other | lineage4.3.3 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR3675482 | Other | lineage4.9 | None | SRR1159378 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR29097004 | Other | lineage3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR245758 | Other | lineage4.9.1 | None | ERR4821053 | Other | lineage3 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR752229 | Other | lineage4.5 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR4596910 | Sensitive | lineage4.9 | None | SRR29096107 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4799378 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR7240033 | Other | La1.8.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR2514821 | Sensitive | lineage2.2.1 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR3675507 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None |
|---|
