Run ID: SRR1791909
Sample name:
Date: 03-04-2023 18:34:31
Number of reads: 801636
Percentage reads mapped: 48.42
Strain: La1.7.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.7 | M.bovis | None | None | 1.0 |
La1.7.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.51 | streptomycin |
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 0.98 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrB | 7158 | c.1931_1933delCCG | disruptive_inframe_deletion | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.3 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1305494 | c.2565_*55delGGCCTAGCCCCGGCGACGATGCCGGGTCGCGGGATGCGGCCCGTTGAGGAGCGGGGCAATCT | frameshift_variant&stop_lost&splice_region_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472543 | n.699_700delCA | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.55 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.51 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472825 | n.980G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472826 | n.981G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472827 | n.982G>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472836 | n.991G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472838 | n.993A>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472845 | n.1000G>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472847 | n.1002G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472873 | n.1028C>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472875 | n.1030T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472877 | n.1032T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472880 | n.1035_1036insA | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472895 | n.1050C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1473327 | n.1482A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476135 | n.2478T>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476141 | n.2484A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476153 | n.2496T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476179 | n.2522C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476211 | n.2554G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476213 | n.2556G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476214 | n.2557G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476215 | n.2558C>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.66 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.57 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.31 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2169989 | c.624C>T | synonymous_variant | 0.11 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
folC | 2746660 | c.938delT | frameshift_variant | 0.23 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
fbiB | 3642478 | p.Asp315Ala | missense_variant | 1.0 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038179 | c.2526C>A | synonymous_variant | 0.15 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 0.97 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |