Run ID: SRR13861504
Sample name:
Date: 03-04-2023 09:33:34
Number of reads: 2218058
Percentage reads mapped: 44.4
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.34 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6027 | p.His263Arg | missense_variant | 0.98 |
mshA | 576327 | p.Phe327Tyr | missense_variant | 1.0 |
rpoB | 759707 | c.-100C>T | upstream_gene_variant | 1.0 |
rpoB | 760178 | c.372G>C | synonymous_variant | 1.0 |
rpoB | 762284 | c.2478G>A | synonymous_variant | 1.0 |
rpoC | 764262 | p.Val298Ala | missense_variant | 1.0 |
mmpL5 | 777280 | p.Ala401Ser | missense_variant | 1.0 |
mmpS5 | 778853 | p.Val18Ala | missense_variant | 1.0 |
embR | 1416662 | p.Arg229Pro | missense_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.23 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476288 | n.2631T>C | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.7 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.63 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.31 |
katG | 2155675 | p.Arg146Leu | missense_variant | 1.0 |
Rv1979c | 2222433 | c.732A>G | synonymous_variant | 1.0 |
ald | 3086631 | c.-189A>G | upstream_gene_variant | 1.0 |
Rv3236c | 3612954 | c.162delC | frameshift_variant | 1.0 |
alr | 3840284 | p.Trp379* | stop_gained | 1.0 |
embC | 4240042 | p.Asn60Lys | missense_variant | 1.0 |
embB | 4245806 | c.-708G>A | upstream_gene_variant | 1.0 |
embB | 4247075 | c.563dupT | frameshift_variant | 1.0 |
embB | 4247839 | c.1326G>A | synonymous_variant | 1.0 |
embB | 4249763 | p.Thr1084Pro | missense_variant | 1.0 |
ethA | 4326860 | p.Leu205Pro | missense_variant | 1.0 |