Run ID: SRR13861362
Sample name:
Date: 03-04-2023 09:29:52
Number of reads: 1074214
Percentage reads mapped: 53.77
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.46 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5807 | p.Val190Phe | missense_variant | 1.0 |
gyrA | 6898 | c.-404G>C | upstream_gene_variant | 1.0 |
gyrA | 8039 | c.738T>C | synonymous_variant | 1.0 |
mshA | 575293 | c.-55T>A | upstream_gene_variant | 1.0 |
mshA | 575414 | p.Gly23Ser | missense_variant | 1.0 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.15 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.11 |
rpoC | 765007 | c.1638T>G | synonymous_variant | 0.13 |
rpoC | 765124 | c.1755G>C | synonymous_variant | 0.97 |
fbiC | 1303686 | c.756C>G | synonymous_variant | 0.12 |
fbiC | 1303695 | c.765T>C | synonymous_variant | 0.12 |
fbiC | 1303728 | c.798G>A | synonymous_variant | 0.11 |
fbiC | 1303730 | p.Leu267Pro | missense_variant | 0.12 |
fbiC | 1303732 | p.Ser268Ala | missense_variant | 0.12 |
fbiC | 1303746 | c.816T>C | synonymous_variant | 0.12 |
fbiC | 1303749 | c.819G>C | synonymous_variant | 0.12 |
fbiC | 1303752 | c.822A>G | synonymous_variant | 0.13 |
fbiC | 1303755 | c.825T>C | synonymous_variant | 0.13 |
fbiC | 1303785 | c.855G>C | synonymous_variant | 0.13 |
fbiC | 1303789 | p.Ile287Val | missense_variant | 0.13 |
fbiC | 1303818 | c.888C>G | synonymous_variant | 0.15 |
fbiC | 1303854 | c.924T>C | synonymous_variant | 0.14 |
fbiC | 1303860 | c.930A>C | synonymous_variant | 0.14 |
fbiC | 1303881 | c.951G>C | synonymous_variant | 0.12 |
fbiC | 1303884 | c.954T>G | synonymous_variant | 0.12 |
fbiC | 1303911 | c.981G>C | synonymous_variant | 0.13 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.12 |
fbiC | 1303920 | c.990C>G | synonymous_variant | 0.13 |
fbiC | 1303929 | c.999G>C | synonymous_variant | 0.14 |
fbiC | 1303947 | c.1017T>C | synonymous_variant | 0.14 |
fbiC | 1303948 | p.Gly340Arg | missense_variant | 0.14 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.34 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.31 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.36 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.41 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.54 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.56 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.71 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.35 |
rpsA | 1834248 | p.His236Leu | missense_variant | 0.94 |
katG | 2154449 | p.Ala555Ser | missense_variant | 1.0 |
PPE35 | 2170218 | p.Ala132Glu | missense_variant | 1.0 |
eis | 2715396 | c.-65delT | upstream_gene_variant | 1.0 |
ribD | 2987136 | p.Val100Ile | missense_variant | 1.0 |
ribD | 2987590 | p.Leu251Arg | missense_variant | 1.0 |
Rv2752c | 3064996 | p.Thr399Asn | missense_variant | 1.0 |
thyA | 3073953 | c.519T>C | synonymous_variant | 0.12 |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.12 |
alr | 3841281 | p.His47Arg | missense_variant | 1.0 |
clpC1 | 4039292 | c.1413C>A | synonymous_variant | 1.0 |
clpC1 | 4039426 | p.Lys427Gln | missense_variant | 0.97 |
embA | 4243228 | c.-5G>T | upstream_gene_variant | 1.0 |
embA | 4243540 | p.Ala103Asp | missense_variant | 1.0 |
embA | 4244146 | p.Asp305Ala | missense_variant | 1.0 |
embB | 4249506 | c.2994delG | frameshift_variant | 0.93 |