Rv0006 - c.-404G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
18 Sensitive
0 RR-TB
23 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
44 Other
lineage Counts
| lineage | Count |
|---|---|
| 8 | |
| lineage4.9 | 33 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage6.3.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.1.2.1 | 3 |
| lineage2.2.1 | 4 |
| lineage4.2;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.1;lineage6.3 | 2 |
| M.canetti;lineage4.9 | 3 |
| lineage4.1.3 | 2 |
| lineage4.6.2.2 | 2 |
| lineage4 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4 | 1 |
| lineage4.6.1 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8 | 1 |
| lineage5.2 | 2 |
| lineage6 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9786604 | Other | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR13837450 | Sensitive | lineage4.9 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR13861723 | Sensitive | lineage4.9 | None | ERR9117721 | HR-TB | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR13837423 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR13837658 | Sensitive | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR13837451 | Sensitive | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR13837659 | Sensitive | lineage4.9 | None | SRR13837932 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR3797043 | Sensitive | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR12416824 | HR-TB | None | ERR3283044 | Other | lineage4 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR13837434 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR13838008 | Sensitive | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786671 | Other | None | SRR13861555 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR25207267 | Pre-XDR-TB | lineage4.5 | None | ERR3797069 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR13861722 | Sensitive | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4800341 | Other | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR13861362 | Other | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR13861527 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR7496509 | Other | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None |
|---|
