Run ID: SRR13837451
Sample name:
Date: 03-04-2023 09:10:39
Number of reads: 882427
Percentage reads mapped: 99.11
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5807 | p.Val190Phe | missense_variant | 1.0 |
gyrA | 6898 | c.-404G>C | upstream_gene_variant | 0.97 |
gyrA | 8039 | c.738T>C | synonymous_variant | 1.0 |
mshA | 575293 | c.-55T>A | upstream_gene_variant | 1.0 |
mshA | 575414 | p.Gly23Ser | missense_variant | 1.0 |
rpoC | 765124 | c.1755G>C | synonymous_variant | 1.0 |
rpsA | 1834248 | p.His236Leu | missense_variant | 1.0 |
katG | 2154449 | p.Ala555Ser | missense_variant | 1.0 |
PPE35 | 2170218 | p.Ala132Glu | missense_variant | 1.0 |
eis | 2715396 | c.-65delT | upstream_gene_variant | 1.0 |
ribD | 2987136 | p.Val100Ile | missense_variant | 1.0 |
ribD | 2987590 | p.Leu251Arg | missense_variant | 1.0 |
Rv2752c | 3064996 | p.Thr399Asn | missense_variant | 1.0 |
alr | 3841281 | p.His47Arg | missense_variant | 1.0 |
clpC1 | 4039292 | c.1413C>A | synonymous_variant | 1.0 |
clpC1 | 4039426 | p.Lys427Gln | missense_variant | 1.0 |
embA | 4243228 | c.-5G>T | upstream_gene_variant | 1.0 |
embA | 4243540 | p.Ala103Asp | missense_variant | 1.0 |
embA | 4244146 | p.Asp305Ala | missense_variant | 1.0 |
embB | 4249506 | c.2994delG | frameshift_variant | 1.0 |