Run ID: SRR5341375
Sample name:
Date: 04-04-2023 10:17:51
Number of reads: 6293
Percentage reads mapped: 0.45
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.98 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpoC | 763486 | c.117T>C | synonymous_variant | 1.0 |
rpoC | 763492 | c.123G>T | synonymous_variant | 1.0 |
rpoC | 763528 | c.159G>A | synonymous_variant | 1.0 |
rpoC | 763546 | c.177A>G | synonymous_variant | 1.0 |
rpoC | 763549 | c.180C>T | synonymous_variant | 1.0 |
rpoC | 763558 | c.189C>T | synonymous_variant | 1.0 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 1.0 |
rpoC | 764491 | c.1122G>T | synonymous_variant | 1.0 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 1.0 |
rpoC | 764500 | c.1131C>G | synonymous_variant | 1.0 |
rpoC | 764701 | c.1332C>G | synonymous_variant | 1.0 |
rpoC | 764713 | c.1344G>T | synonymous_variant | 1.0 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 1.0 |
rpoC | 764746 | c.1377G>T | synonymous_variant | 1.0 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 1.0 |
rpoC | 764758 | c.1389C>G | synonymous_variant | 1.0 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 1.0 |
rpoC | 766315 | c.2946C>G | synonymous_variant | 1.0 |
rpoC | 766345 | c.2976T>C | synonymous_variant | 1.0 |
rpoC | 766348 | c.2979A>G | synonymous_variant | 1.0 |
rpoC | 766363 | c.2994G>C | synonymous_variant | 1.0 |
rpoC | 766381 | c.3012C>T | synonymous_variant | 1.0 |
rpoC | 766384 | c.3015A>G | synonymous_variant | 1.0 |
rpoC | 766390 | c.3021C>T | synonymous_variant | 1.0 |
rpoC | 767008 | c.3639G>A | synonymous_variant | 1.0 |
rpoC | 767020 | c.3651C>G | synonymous_variant | 1.0 |
rpoC | 767197 | c.3828G>A | synonymous_variant | 1.0 |
rpoC | 767221 | c.3852C>G | synonymous_variant | 1.0 |
rpoC | 767230 | c.3861G>C | synonymous_variant | 1.0 |
rpoC | 767233 | c.3864T>C | synonymous_variant | 1.0 |
rrs | 1472061 | n.216A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472075 | n.230A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472112 | n.267C>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472128 | n.283G>A | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.91 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.94 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.8 |
rrs | 1472262 | n.417C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1472269 | n.424G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472271 | n.426T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472378 | n.533G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472379 | n.534T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472382 | n.537G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472389 | n.544G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.81 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.95 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.93 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.75 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.97 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.98 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.97 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473054 | n.1209C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473055 | n.1210C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473056 | n.1211A>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473080 | n.1235C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473082 | n.1237G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473083 | n.1238G>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473147 | n.1302G>T | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473148 | n.1303G>A | non_coding_transcript_exon_variant | 0.85 |
rrs | 1473163 | n.1318C>T | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473164 | n.1319C>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.89 |
rrs | 1473172 | n.1327T>C | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473173 | n.1328C>T | non_coding_transcript_exon_variant | 0.94 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 0.95 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473248 | n.1403G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473249 | n.1404T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473255 | n.1410A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1473259 | n.1414C>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473260 | n.1415G>T | non_coding_transcript_exon_variant | 0.78 |
rrs | 1473276 | n.1431A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473290 | n.1445C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473291 | n.1446_1447insT | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473301 | n.1456T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473352 | n.1507C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474866 | n.1209C>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474869 | n.1212G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475782 | n.2125T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1475877 | n.2220C>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476099 | n.2442A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476103 | n.2446C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476105 | n.2448G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476106 | n.2449A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476110 | n.2453G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476131 | n.2474C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.97 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.99 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.98 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.89 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476664 | n.3007T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476665 | n.3008T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476674 | n.3017T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476679 | n.3022T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 1.0 |
rpsA | 1834213 | c.672G>C | synonymous_variant | 1.0 |
rpsA | 1834234 | c.693G>C | synonymous_variant | 1.0 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 1.0 |
rpsA | 1834246 | c.705G>C | synonymous_variant | 1.0 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 1.0 |
rpsA | 1834252 | c.711C>G | synonymous_variant | 1.0 |
rpsA | 1834261 | c.720A>G | synonymous_variant | 1.0 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 1.0 |
rpsA | 1834279 | c.738C>T | synonymous_variant | 1.0 |
rpsA | 1834297 | c.756C>T | synonymous_variant | 1.0 |
rpsA | 1834345 | c.804C>T | synonymous_variant | 1.0 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 1.0 |
rpsA | 1834361 | c.820T>C | synonymous_variant | 1.0 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 1.0 |
rpsA | 1834369 | c.828C>G | synonymous_variant | 1.0 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 1.0 |
rpoA | 3877848 | c.660C>T | synonymous_variant | 1.0 |
rpoA | 3877856 | c.652T>C | synonymous_variant | 1.0 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 1.0 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 1.0 |
rpoA | 3877875 | c.633T>A | synonymous_variant | 1.0 |
rpoA | 3877878 | c.630G>C | synonymous_variant | 1.0 |
rpoA | 3877887 | c.621G>C | synonymous_variant | 1.0 |
clpC1 | 4038602 | c.2103G>C | synonymous_variant | 1.0 |