Run ID: SRR6981982
Sample name:
Date: 04-04-2023 18:24:01
Number of reads: 2361475
Percentage reads mapped: 96.33
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 0.98 |
lineage4.1.2 | Euro-American | T;H | None | 0.99 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 0.98 |
mshA | 575679 | p.Asn111Ser | missense_variant | 0.99 |
rpoB | 760115 | c.309C>T | synonymous_variant | 0.99 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476165 | n.2508T>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476194 | n.2537A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476195 | n.2538C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476196 | n.2539C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476200 | n.2543A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476201 | n.2544C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476204 | n.2547C>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476210 | n.2553G>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476212 | n.2555T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476214 | n.2557G>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 0.96 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |