lineage | Count |
---|---|
lineage4.1.2.1 | 3 |
lineage2.2.1 | 125 |
lineage2.2.2 | 22 |
lineage3 | 24 |
lineage2.2.1.1 | 10 |
lineage4.4.2 | 1 |
lineage4.8 | 5 |
lineage3.1 | 1 |
lineage6.3.1 | 3 |
lineage5.1.1 | 3 |
lineage3.1.1 | 2 |
lineage4.3.4.1 | 1 |
lineage4.6.3 | 1 |
lineage3.1.2.1 | 2 |
lineage4.5 | 2 |
lineage3.1.2 | 2 |
lineage3;lineage4.4 | 3 |
lineage4.2.2.2 | 1 |
lineage4.6.5 | 1 |
spoligotype | Count |
---|---|
None | 212 |
ID | Drug resistance | Lineage | Country iso2 | ERR13285165 | MDR-TB | lineage4.1.2.1 | None | ERR10748133 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049033 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025557 | Pre-XDR-TB | lineage2.2.2 | None | SRR6824684 | MDR-TB | lineage2.2.1 | cn | ERR6397156 | Sensitive | lineage3 | None | ERR3132166 | Sensitive | lineage3 | None | SRR24256093 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723542 | MDR-TB | lineage2.2.1 | None | ERR2514279 | Sensitive | lineage3 | gb | SRR29017634 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25206955 | Pre-XDR-TB | lineage2.2.1 | None | SRR5266534 | Pre-XDR-TB | lineage2.2.1 | ru | SRR10305976 | Pre-XDR-TB | lineage2.2.2 | None | SRR26112726 | Sensitive | lineage2.2.1.1 | None | DRR130182 | MDR-TB | lineage2.2.1 | None | SRR21576676 | MDR-TB | lineage4.4.2 | None | SRR5709900 | Pre-XDR-TB | lineage2.2.1 | th | SRR6824594 | Pre-XDR-TB | lineage2.2.2 | cn | ERR4195421 | Sensitive | lineage4.8 | None | ERR4829904 | Other | lineage4.1.2.1 | it | ERR4798850 | Sensitive | lineage3 | in | SRR1049032 | Pre-XDR-TB | lineage2.2.1 | None | SRR15316221 | MDR-TB | lineage2.2.1 | None | SRR29017289 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR8025761 | Pre-XDR-TB | lineage2.2.2 | None | SRR1723838 | Pre-XDR-TB | lineage2.2.1 | cn | SRR21277286 | Pre-XDR-TB | lineage2.2.1 | None | SRR10305974 | Other | lineage2.2.1.1 | None | ERR2510623 | Pre-XDR-TB | lineage3.1 | pk | ERR4810481 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5863809 | MDR-TB | lineage2.2.1 | None | ERR7361985 | Pre-XDR-TB | lineage2.2.2 | None | ERR5865925 | MDR-TB | lineage2.2.1 | None | ERR5866402 | MDR-TB | lineage2.2.1 | None | SRR3105733 | Pre-XDR-TB | lineage3 | None | SRR1723755 | Sensitive | lineage2.2.1 | cn | SRR6824587 | MDR-TB | lineage2.2.1 | cn | ERR4816146 | Sensitive | lineage3 | gb | SRR28385881 | MDR-TB | lineage2.2.2 | None | ERR13242803 | MDR-TB | lineage2.2.1 | None | SRR12062540 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748223 | MDR-TB | lineage2.2.1 | None | SRR10040268 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811306 | MDR-TB | lineage2.2.1 | cn | ERR4796781 | Pre-XDR-TB | lineage2.2.1 | in | ERR4810606 | Sensitive | lineage2.2.1 | cn | ERR11044286 | HR-TB | lineage6.3.1 | None | ERR4162008 | Sensitive | lineage5.1.1 | None | ERR2041781 | MDR-TB | lineage2.2.1 | rs | SRR25207194 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866400 | MDR-TB | lineage2.2.1 | None | DRR188749 | Other | lineage2.2.1 | None | ERR13284326 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827813 | MDR-TB | lineage2.2.1 | None | ERR4818245 | Sensitive | lineage3.1.1 | gb | SRR16915705 | HR-TB | lineage4.3.4.1 | None | ERR13266507 | Sensitive | lineage3 | None | SRR10040217 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723426 | Pre-XDR-TB | lineage2.2.2 | cn | ERR4822356 | MDR-TB | lineage2.2.2 | None | SRR20969423 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207346 | MDR-TB | lineage2.2.1 | None | SRR29539164 | MDR-TB | lineage2.2.1 | None | SRR26399902 | Other | lineage2.2.1 | None | ERR502534 | Sensitive | lineage6.3.1 | gh | SRR1013638 | Pre-XDR-TB | lineage2.2.1 | None | SRR12062537 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | SRR29356750 | HR-TB | lineage3 | None | SRR29385426 | Pre-XDR-TB | lineage2.2.2 | None | SRR1723812 | MDR-TB | lineage2.2.1 | cn | SRR15315702 | MDR-TB | lineage2.2.1 | None | ERR13267744 | HR-TB | lineage6.3.1 | None | SRR6797515 | Sensitive | lineage2.2.1.1 | None | SRR29124325 | Sensitive | lineage4.6.3 | None | SRR1723443 | HR-TB | lineage2.2.1 | cn | ERR9121379 | Sensitive | lineage4.8 | None | ERR4800379 | Pre-XDR-TB | lineage3.1.2.1 | in | DRR034443 | Sensitive | lineage2.2.1 | None | SRR10040302 | MDR-TB | lineage2.2.1 | None | ERR5979423 | Other | lineage3 | None | SRR28467020 | Pre-XDR-TB | lineage2.2.2 | None | SRR28888060 | Pre-XDR-TB | lineage2.2.1 | None | ERR12790842 | RR-TB | lineage2.2.1 | None | ERR1213917 | Sensitive | lineage3 | pk | SRR8651603 | Pre-XDR-TB | lineage2.2.1 | cn | SRR10040160 | MDR-TB | lineage2.2.1 | None | ERR4815862 | Sensitive | lineage3 | gb | SRR18002928 | MDR-TB | lineage2.2.1 | None | SRR6280158 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723442 | HR-TB | lineage2.2.1 | cn | SRR7069314 | Other | lineage3 | None | SRR28434981 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662537 | MDR-TB | lineage2.2.1 | None | ERR10748099 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969362 | MDR-TB | lineage2.2.1 | None | ERR4810566 | Sensitive | lineage2.2.1 | cn | SRR20969638 | MDR-TB | lineage2.2.1 | None | ERR4828076 | MDR-TB | lineage2.2.1 | None | SRR6797790 | Sensitive | lineage2.2.1.1 | None | SRR13180213 | MDR-TB | lineage2.2.1 | None | SRR8366173 | MDR-TB | lineage2.2.1 | None | ERR10849250 | Sensitive | lineage3 | None | ERR11050932 | Sensitive | lineage3 | None | SRR11662332 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25207267 | Pre-XDR-TB | lineage4.5 | None | SRR13423564 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869078 | Pre-XDR-TB | lineage2.2.2 | None | ERR4821295 | Sensitive | lineage2.2.1 | gb | ERR13276109 | MDR-TB | lineage2.2.1 | None | ERR4810539 | Pre-XDR-TB | lineage2.2.1 | cn | SRR25207285 | Pre-XDR-TB | lineage2.2.1 | None | SRR15723268 | Sensitive | lineage2.2.1 | None | ERR502946 | Pre-XDR-TB | lineage2.2.2 | None | SRR7592384 | Pre-XDR-TB | lineage4.8 | None | ERR13288805 | MDR-TB | lineage2.2.1 | None | ERR4811337 | MDR-TB | lineage2.2.1 | cn | SRR20969769 | RR-TB | lineage2.2.1 | None | ERR718490 | Sensitive | lineage2.2.1 | th | SRR10040546 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723704 | Other | lineage2.2.1.1 | cn | SRR10305964 | MDR-TB | lineage2.2.1 | None | SRR25206940 | MDR-TB | lineage2.2.1 | None | ERR4811572 | MDR-TB | lineage2.2.1 | cn | SRR29094476 | Sensitive | lineage4.8 | None | ERR11081864 | Other | lineage3 | None | ERR4815553 | HR-TB | lineage4.8 | None | ERR13290953 | Sensitive | lineage2.2.1.1 | None | DRR130074 | MDR-TB | lineage2.2.2 | None | SRR10808732 | Sensitive | lineage2.2.2 | None | DRR130162 | MDR-TB | lineage2.2.1 | None | SRR25207394 | Pre-XDR-TB | lineage2.2.1 | None | DRR130189 | Pre-XDR-TB | lineage2.2.1 | None | SRR6824556 | Sensitive | lineage4.5 | cn | ERR11081547 | MDR-TB | lineage4.1.2.1 | None | ERR7737940 | MDR-TB | lineage2.2.1 | None | SRR12062536 | Pre-XDR-TB | lineage2.2.1 | None | ERR6397158 | Sensitive | lineage3 | None | ERR4553870 | MDR-TB | lineage2.2.1 | None | SRR10869232 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639779 | MDR-TB | lineage2.2.1 | None | SRR29385423 | Pre-XDR-TB | lineage2.2.2 | None | SRR9971214 | MDR-TB | lineage2.2.1 | None | SRR10040404 | Pre-XDR-TB | lineage2.2.1 | None | SRR26800447 | Sensitive | lineage3 | None | ERR4799856 | Other | lineage3.1.2 | in | SRR12062535 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044701 | Sensitive | lineage3 | None | SRR2101263 | HR-TB | lineage3;lineage4.4 | None | SRR10040330 | MDR-TB | lineage2.2.1 | None | SRR10828199 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360598 | Pre-XDR-TB | lineage2.2.1 | kr | SAMN03246292 | MDR-TB | lineage2.2.1 | cn | ERR4162023 | Sensitive | lineage5.1.1 | None | ERR4553883 | MDR-TB | lineage2.2.1 | None | ERR4827958 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813184 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827599 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822360 | MDR-TB | lineage2.2.1 | None | ERR8774375 | MDR-TB | lineage2.2.1 | None | SRR28467049 | Pre-XDR-TB | lineage2.2.2 | None | SRR25206906 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645975 | MDR-TB | lineage2.2.1 | None | SRR28385882 | MDR-TB | lineage2.2.2 | None | SRR28046151 | Sensitive | lineage3 | None | SRR1013639 | Pre-XDR-TB | lineage2.2.1 | None | SRR29358138 | Pre-XDR-TB | lineage2.2.1 | None | ERR351926 | HR-TB | lineage3;lineage4.4 | None | ERR13258499 | MDR-TB | lineage2.2.1 | None | ERR11049630 | Sensitive | lineage4.2.2.2 | None | ERR2510466 | MDR-TB | lineage3 | pk | ERR4162013 | Sensitive | lineage5.1.1 | None | ERR5866401 | MDR-TB | lineage2.2.1 | None | SRR12062539 | Pre-XDR-TB | lineage2.2.1 | None | SRR28385876 | Pre-XDR-TB | lineage2.2.2 | None | SRR8217894 | Pre-XDR-TB | lineage2.2.1 | None | SRR25206876 | MDR-TB | lineage2.2.1 | None | SRR29772515 | MDR-TB | lineage2.2.1.1 | None | SRR24710247 | Pre-XDR-TB | lineage2.2.1 | None | SRR29385351 | MDR-TB | lineage2.2.1 | None | SRR28351172 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800587 | Pre-XDR-TB | lineage3 | in | ERR3470621 | Other | lineage3 | None | ERR4799399 | RR-TB | lineage3 | in | SRR29093241 | Pre-XDR-TB | lineage2.2.2 | None | ERR13273323 | MDR-TB | lineage2.2.1 | None | SRR25827540 | XDR-TB | lineage2.2.1 | None | ERR4796506 | Pre-XDR-TB | lineage3.1.2.1 | in | SRR6257027 | MDR-TB | lineage2.2.1 | ru | SRR10040512 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081427 | HR-TB | lineage2.2.1 | None | ERR6397187 | Sensitive | lineage3.1.1 | None | SRR26800485 | Other | lineage4.6.5 | None | SRR2024931 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5865118 | MDR-TB | lineage2.2.1 | None | ERR4830938 | Pre-XDR-TB | lineage2.2.1 | np | SRR25389515 | MDR-TB | lineage2.2.1 | None | ERR551782 | Pre-XDR-TB | lineage2.2.1 | None | DRR473682 | Sensitive | lineage2.2.1 | None | ERR4811292 | Pre-XDR-TB | lineage2.2.1 | cn | SRR20969864 | HR-TB | lineage2.2.1 | None | SRR6257019 | Pre-XDR-TB | lineage2.2.1 | None | SRR5073526 | Other | lineage2.2.1 | vn | SRR29230892 | Sensitive | lineage3 | None | SRR21279393 | Sensitive | lineage2.2.1 | None | SRR6480317 | Sensitive | lineage2.2.2 | None | SRR8380949 | Sensitive | lineage3.1.2 | in | ERR4811320 | XDR-TB | lineage2.2.2 | cn | ERR386858 | HR-TB | lineage3;lineage4.4 | None | SRR25514907 | Sensitive | lineage2.2.1 | None | SRR5709906 | MDR-TB | lineage2.2.2 | th |
---|