SRR10040440
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR3335741
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR5897120
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR25207019
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539739
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799366
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10808400
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.7
|
None
|
ERR13285082
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2707051
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR11972292
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865859
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866181
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10808404
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8651599
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR6832607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794454
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813078
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR11567807
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12117996
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681358
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813175
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR25827792
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11662136
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR11662297
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR7911498
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR28394220
|
MDR-TB
|
lineage4.1.1
|
None
|
ERR2124101
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29231791
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR16088324
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12062528
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4813207
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SAMEA104362086
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.7
|
None
|
SRR10040157
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR502927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813214
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR11972309
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812705
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR11081339
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5866286
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5866180
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972402
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24709985
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865117
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865650
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9029917
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.7
|
None
|
ERR4831431
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4813204
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR3014580
|
MDR-TB
|
lineage4.8
|
tn
|
SRR15369028
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828112
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813153
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16087905
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813398
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR16088462
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11068618
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307487
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813574
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824655
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR5865116
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11567809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2184241
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR29539404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088588
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2184245
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.7
|
None
|
ERR775382
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR13870426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516978
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR12117973
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044893
|
MDR-TB
|
lineage4.8
|
None
|
ERR1654671
|
MDR-TB
|
lineage4.6.1.2
|
None
|
SRR29385405
|
Other
|
lineage2.2.1
|
None
|
SRR12062492
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR12062493
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR6785289
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813691
|
Pre-XDR-TB
|
lineage4.1.1
|
None
|
ERR2516517
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR1723639
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4812913
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13870368
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR779919
|
MDR-TB
|
lineage4.1.1
|
pe
|
SRR6832610
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813188
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.2
|
pe
|
ERR5918113
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR2516697
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR10040431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043578
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR11567810
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12117980
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813206
|
Pre-XDR-TB
|
lineage4.1.1
|
pe
|
ERR4813155
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR12062494
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR24709932
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043129
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11773825
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11081755
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516845
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4827600
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813180
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
pe
|
ERR4830645
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR6832613
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10430396
|
MDR-TB
|
lineage2.2.1;lineage4.3.2.1
|
None
|
ERR3287433
|
MDR-TB
|
lineage2.2.1
|
pe
|
ERR4813351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539678
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180972
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1199106
|
MDR-TB
|
lineage4.6.1.2
|
cd
|
SRR5709892
|
Pre-XDR-TB
|
lineage2.2.1.1
|
th
|
SRR13870366
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639758
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394150
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827449
|
MDR-TB
|
lineage1.1.2;lineage1.1.3.1;lineage2.2.1
|
None
|
SRR18715333
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
ERR983240
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681260
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539790
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812839
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10828179
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR5152953
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1181090
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285073
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4553483
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1181121
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10341350
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR16088411
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13285101
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4830045
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21276944
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4813170
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR5865118
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017594
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824648
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR13870406
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827941
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866182
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260221
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813823
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR5866284
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5866285
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR6832814
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799128
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
SRR12420365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287584
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813042
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR8975692
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR12062529
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR16088427
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088586
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865119
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812905
|
MDR-TB
|
lineage2.2.1
|
pe
|
SRR11567808
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13261073
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351269
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|