Rv2043c - p.Thr142Ala
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
2 HR-TB
72 MDR-TB
85 Pre-XDR-TB
1 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 112 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.6.1.2 | 4 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.1 | 5 |
| lineage3 | 2 |
| lineage4.4.2 | 7 |
| lineage2.2.1.1 | 5 |
| lineage4.4.1.1 | 2 |
| lineage4.8 | 5 |
| lineage4.2.1 | 6 |
| lineage2.2.1;lineage4.7 | 4 |
| lineage3.1.2.1 | 1 |
| lineage1.1.2;lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 2 |
| lineage2.2.1;lineage4.2.1.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 161 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR983240 | MDR-TB | lineage2.2.1 | None | ERR5897120 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | ERR4812839 | MDR-TB | lineage2.2.1 | None | ERR4812913 | MDR-TB | lineage2.2.1 | None | ERR2707051 | MDR-TB | lineage4.6.1.2 | cd | ERR4813188 | Pre-XDR-TB | lineage2.2.1;lineage4 | pe | ERR4813204 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813207 | Pre-XDR-TB | lineage2.2.1 | pe | ERR502927 | MDR-TB | lineage2.2.1 | None | ERR775382 | Pre-XDR-TB | lineage2.2.1 | pe | ERR779919 | MDR-TB | lineage4.1.1 | pe | ERR4831431 | Pre-XDR-TB | lineage3 | None | ERR4813042 | Pre-XDR-TB | lineage2.2.1 | pe | SRR16088588 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152953 | MDR-TB | lineage2.2.1 | None | SRR13870426 | Pre-XDR-TB | lineage2.2.1 | None | ERR1199106 | MDR-TB | lineage4.6.1.2 | cd | ERR2516517 | MDR-TB | lineage4.1.1 | pe | ERR4553483 | HR-TB | lineage2.2.1 | None | SRR29385405 | Other | lineage2.2.1 | None | ERR5866181 | MDR-TB | lineage2.2.1 | None | SRR12062492 | Pre-XDR-TB | lineage4.4.2 | None | SRR10341350 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR10808404 | MDR-TB | lineage2.2.1 | None | SRR6832607 | MDR-TB | lineage2.2.1 | None | SRR11567807 | Pre-XDR-TB | lineage2.2.1 | None | ERR2184241 | MDR-TB | lineage2.2.1 | pe | ERR3287584 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088428 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040157 | Pre-XDR-TB | lineage4.4.2 | None | ERR4813823 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR5866284 | Pre-XDR-TB | lineage4.8 | None | ERR5866285 | Pre-XDR-TB | lineage4.8 | None | SRR24709932 | MDR-TB | lineage2.2.1 | None | ERR11081339 | MDR-TB | lineage4.2.1 | None | ERR5866286 | Pre-XDR-TB | lineage4.8 | None | ERR13285101 | MDR-TB | lineage4.2.1 | None | SRR16088418 | Pre-XDR-TB | lineage2.2.1 | None | ERR13285082 | MDR-TB | lineage4.2.1 | None | ERR11081755 | MDR-TB | lineage2.2.1 | None | SRR11972402 | MDR-TB | lineage2.2.1 | None | SRR24709985 | MDR-TB | lineage2.2.1 | None | SRR12420365 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827600 | Pre-XDR-TB | lineage2.2.1 | None | ERR9029917 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | SRR29681358 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260221 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832613 | MDR-TB | lineage2.2.1 | None | SRR12062529 | Pre-XDR-TB | lineage4.4.2 | None | ERR13285073 | MDR-TB | lineage4.2.1 | None | SRR29356702 | MDR-TB | lineage2.2.1 | None | SRR29539678 | Pre-XDR-TB | lineage2.2.1 | None | SRR16087905 | MDR-TB | lineage2.2.1 | None | SRR29681260 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088462 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539404 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068618 | MDR-TB | lineage2.2.1 | None | ERR3335741 | Pre-XDR-TB | lineage3 | pk | ERR2307487 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799128 | Pre-XDR-TB | lineage3.1.2.1 | in | SRR13870366 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827449 | MDR-TB | lineage1.1.2;lineage1.1.3.1;lineage2.2.1 | None | ERR8975692 | MDR-TB | lineage4.4.1.1 | None | SRR5709892 | Pre-XDR-TB | lineage2.2.1.1 | th | SRR1181090 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972292 | MDR-TB | lineage2.2.1 | None | SRR1181121 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088411 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832610 | MDR-TB | lineage2.2.1 | None | ERR4813206 | Pre-XDR-TB | lineage4.1.1 | pe | ERR4812905 | MDR-TB | lineage2.2.1 | pe | ERR4813162 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813398 | MDR-TB | lineage2.2.1 | pe | SRR11662297 | HR-TB | lineage2.2.1.1 | None | SRR28394220 | MDR-TB | lineage4.1.1 | None | SRR10040431 | MDR-TB | lineage2.2.1 | None | SRR16088324 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043578 | MDR-TB | lineage4.2.1 | None | ERR4827941 | MDR-TB | lineage2.2.1 | None | SAMEA104362086 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | ERR5866182 | MDR-TB | lineage2.2.1 | None | SRR6832814 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043129 | MDR-TB | lineage4.2.1 | None | ERR5865117 | MDR-TB | lineage2.2.1 | None | ERR5865650 | MDR-TB | lineage2.2.1 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | ERR3014580 | MDR-TB | lineage4.8 | tn | SRR10430396 | MDR-TB | lineage2.2.1;lineage4.3.2.1 | None | SRR15369028 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828112 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813153 | MDR-TB | lineage2.2.1 | None | SRR1180972 | MDR-TB | lineage2.2.1 | None | SRR25207019 | MDR-TB | lineage2.2.1 | None | ERR4813574 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231791 | MDR-TB | lineage4.6.1.2 | None | SRR28394150 | MDR-TB | lineage2.2.1 | None | SRR18715333 | MDR-TB | lineage2.2.1;lineage4.2.1.1 | None | SRR10040440 | MDR-TB | lineage4.4.2 | None | ERR5918113 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911498 | MDR-TB | lineage2.2.1 | vn | ERR4812705 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813155 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813170 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4830645 | MDR-TB | lineage2.2.1 | tm | ERR4813180 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | pe | ERR4813351 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799366 | Pre-XDR-TB | lineage2.2.1 | None | SRR10808400 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | ERR2184245 | Pre-XDR-TB | lineage2.2.1;lineage4.7 | None | SRR10828179 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2516845 | MDR-TB | lineage2.2.1 | gb | ERR2516978 | MDR-TB | lineage2.2.1 | gb | ERR2516697 | MDR-TB | lineage2.2.1 | pe | SRR6824648 | MDR-TB | lineage2.2.1 | cn | SRR6824655 | MDR-TB | lineage2.2.1 | cn | ERR12117973 | Pre-XDR-TB | lineage2.2.1 | None | SRR28044893 | MDR-TB | lineage4.8 | None | ERR1654671 | MDR-TB | lineage4.6.1.2 | None | ERR5865859 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785289 | MDR-TB | lineage2.2.1 | None | ERR4813691 | Pre-XDR-TB | lineage4.1.1 | None | ERR3794454 | MDR-TB | lineage2.2.1 | None | SRR13870368 | MDR-TB | lineage2.2.1 | None | ERR12117996 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830045 | Pre-XDR-TB | lineage2.2.1 | None | SRR21276944 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR25827792 | XDR-TB | lineage2.2.1 | None | SRR11662136 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR3287433 | MDR-TB | lineage2.2.1 | pe | ERR4813078 | Pre-XDR-TB | lineage2.2.1 | pe | ERR2124101 | MDR-TB | lineage2.2.1 | None | ERR5865118 | MDR-TB | lineage2.2.1 | None | SRR12062528 | Pre-XDR-TB | lineage4.4.2 | None | SRR13870406 | Pre-XDR-TB | lineage2.2.1 | None | SRR11567810 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723639 | MDR-TB | lineage2.2.1 | cn | ERR5865860 | Pre-XDR-TB | lineage2.2.1 | None | ERR12117980 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972359 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972309 | Pre-XDR-TB | lineage2.2.1 | None | SRR12062494 | Pre-XDR-TB | lineage4.4.2 | None | ERR11773825 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866180 | MDR-TB | lineage2.2.1 | None | SRR10303343 | MDR-TB | lineage2.2.1;lineage4.3.2.1 | None | ERR13260669 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017594 | MDR-TB | lineage2.2.1 | None | SRR29539739 | MDR-TB | lineage2.2.1 | None | ERR13261073 | Pre-XDR-TB | lineage2.2.1 | None | SRR29094463 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088427 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088586 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865119 | MDR-TB | lineage2.2.1 | None | SRR29539790 | Pre-XDR-TB | lineage2.2.1 | None | SRR11567808 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865116 | MDR-TB | lineage2.2.1 | None | ERR4813175 | Pre-XDR-TB | lineage2.2.1 | pe | ERR4813214 | MDR-TB | lineage2.2.1 | pe | SRR8651599 | Pre-XDR-TB | lineage2.2.1 | cn | ERR3639758 | MDR-TB | lineage2.2.1 | None | SRR11567809 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351269 | Pre-XDR-TB | lineage2.2.1 | None |
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