Run ID: SRR6832507
Sample name:
Date: 04-04-2023 17:28:18
Number of reads: 1815085
Percentage reads mapped: 82.59
Strain: lineage4.8
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.54 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472122 | n.277G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472137 | n.292G>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.58 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472203 | n.358G>A | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472210 | n.365A>C | non_coding_transcript_exon_variant | 0.53 |
rrs | 1472213 | n.368G>C | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472215 | n.370A>G | non_coding_transcript_exon_variant | 0.52 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.48 |
rrs | 1472234 | n.389T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472236 | n.391C>G | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472543 | n.699_700delCA | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472570 | n.725G>A | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.43 |
rrs | 1472573 | n.728C>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.42 |
rrs | 1472596 | n.751G>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.47 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.54 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.49 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.46 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473191 | n.1346C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473226 | n.1381C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.72 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.73 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.81 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.77 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.76 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.65 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.62 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476525 | n.2868A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476547 | n.2890C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476567 | n.2910C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476572 | n.2915G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476573 | n.2916A>T | non_coding_transcript_exon_variant | 0.18 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746798 | c.801G>A | synonymous_variant | 0.1 |
thyA | 3074422 | p.Pro17Leu | missense_variant | 1.0 |
clpC1 | 4039729 | p.Asp326Asn | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |