Run ID: ERR2027207
Sample name:
Date: 31-03-2023 15:39:38
Number of reads: 18788554
Percentage reads mapped: 99.31
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.18 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 1.0 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 764109 | p.Arg247His | missense_variant | 1.0 |
rpoC | 766582 | c.3213C>A | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474497 | n.840G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474506 | n.849C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474516 | n.859C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474529 | n.872A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474530 | n.873G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474539 | n.882C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474540 | n.883T>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1474823 | n.1166C>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474827 | n.1170C>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1474830 | n.1173A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474831 | n.1174A>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474864 | n.1207C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474883 | n.1226T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1474904 | n.1247G>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475753 | n.2096C>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.1 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
embC | 4242075 | p.Arg738Gln | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |