Rv3596c - c.780C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
23 Sensitive
3 RR-TB
24 HR-TB
6 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
30 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1 | 6 |
| lineage2.2.1 | 6 |
| 1 | |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La1.4 | 1 |
| lineage4.9 | 28 |
| lineage6 | 1 |
| La1.8.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| La1;lineage4.9 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.1.2 | 1 |
| lineage4.8 | 7 |
| lineage3 | 3 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage2;lineage4 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 87 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR9119273 | Sensitive | lineage1.1.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12006550 | Sensitive | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR9787336 | RR-TB | lineage6 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR5431730 | Other | La1.8.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR29906775 | Sensitive | lineage4.8 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR28351444 | MDR-TB | lineage3 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR4829511 | Sensitive | lineage4.8 | it | ERR3283055 | HR-TB | lineage4.9 | None | ERR4829819 | Sensitive | lineage4.8 | it | ERR2693252 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4817554 | Other | lineage1.1.1 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4816852 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR11462861 | Other | La1.8.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR29127087 | Sensitive | lineage4.8 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4830212 | Sensitive | lineage1.1.1 | vn | ERR4769497 | Other | La1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR29124301 | Sensitive | lineage4.8 | None | ERR4816322 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR26399712 | Sensitive | lineage1.1.1 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR26399382 | HR-TB | lineage1.1.1 | None | SRR6046492 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR29096399 | Sensitive | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4.9 | None |
|---|
