lineage | Count |
---|---|
lineage4.3.3 | 3 |
54 | |
lineage4.2.1.1 | 1 |
La2 | 1 |
lineage4.1.2.1 | 14 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 2 |
lineage4.9 | 50 |
La1.8.1 | 2 |
lineage6.1.1 | 2 |
lineage4.6.2.2 | 2 |
lineage3 | 3 |
lineage4.8 | 4 |
lineage3.1.2 | 1 |
lineage4 | 6 |
lineage2.2.1 | 6 |
lineage4.6.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage2.2.2 | 1 |
lineage6.1.3 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2 | 2 |
lineage4.6.1.2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2.2 | 1 |
lineage1.2.1.2 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage1.1.1 | 2 |
lineage1.2.1.2.1 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1 | 1 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4;lineage2 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1 | 1 |
lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 182 |
ID | Drug resistance | Lineage | Country iso2 | SRR6831950 | Other | lineage4.3.3 | None | ERR294248 | HR-TB | None | ERR323036 | HR-TB | None | SRR6832685 | Pre-XDR-TB | lineage4.2.1.1 | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7535086 | Other | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4798504 | Other | lineage3 | None | ERR4796577 | MDR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR736865 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | SRR26936983 | MDR-TB | lineage2.2.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172717 | Other | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675482 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR4815310 | Other | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675558 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | ERR176740 | HR-TB | None | ERR212034 | HR-TB | None | ERR4817069 | RR-TB | None | ERR212123 | Other | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR5341470 | HR-TB | None | ERR4819314 | Other | lineage1.1.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2514327 | HR-TB | lineage4.8 | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6046133 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4829606 | Sensitive | lineage4.1.2.1 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None |
---|