Rv0006 - c.1641G>C
Drug resistance types
55 Sensitive
6 RR-TB
184 HR-TB
20 MDR-TB
10 Pre-XDR-TB
0 XDR-TB
147 Other
lineage Counts
| lineage | Count |
|---|---|
| 185 | |
| lineage3 | 3 |
| lineage2.2.1 | 27 |
| lineage4 | 55 |
| La1.8.1 | 3 |
| La3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.9 | 53 |
| lineage4.3.3 | 6 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.2 | 9 |
| lineage3.1 | 4 |
| lineage2 | 3 |
| lineage4.3.4.1 | 1 |
| lineage4.5 | 2 |
| lineage1.2.1.2 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage2.1 | 2 |
| lineage9;lineage3.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.9;La3 | 1 |
| lineage4.1 | 3 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.1.1 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4.2.1 | 3 |
| lineage4.3.4 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage4.1.2.1 | 11 |
| lineage4.3 | 1 |
| lineage4.8 | 2 |
| lineage5.1.4 | 1 |
| lineage1.1.1 | 1 |
| lineage4.9.1 | 1 |
| lineage1.1 | 1 |
| lineage4.6.2.2 | 5 |
| lineage4.2.1.1 | 1 |
| La2 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.4.2 | 1 |
| La1 | 2 |
| lineage6.1.1 | 2 |
| lineage4;lineage3.1 | 1 |
| La1.2 | 1 |
| lineage4.8;La3 | 1 |
| lineage3.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 422 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR987722 | HR-TB | None | ERR990545 | Other | lineage3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1169306 | Other | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1172234 | Other | None | SRR1172857 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173484 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12142341 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR1196768 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13837824 | Other | lineage4.9 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR20969731 | Other | lineage2.2.1 | None | SRR1640750 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19304036 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR1710057 | Other | lineage2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20970016 | Other | lineage2.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176778 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176779 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675502 | Other | None | ERR158583 | HR-TB | None | ERR1035239 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | SRR3675501 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR181744 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | ERR181824 | HR-TB | lineage4 | None | ERR4815471 | Other | lineage4.9 | None | ERR3275450 | Other | lineage4 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675222 | Other | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675266 | Sensitive | lineage4.9 | None | ERR176740 | HR-TB | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675318 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4817060 | RR-TB | None | SRR3675542 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR212121 | HR-TB | None | ERR212123 | Other | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2446566 | Other | lineage4.1 | None | ERR4817735 | Other | lineage4.8 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR1035162 | Other | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR4819051 | Other | lineage4 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341453 | Sensitive | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819462 | Other | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341418 | Other | None | ERR2514552 | Sensitive | lineage3 | None | ERR2693239 | HR-TB | None | SRR5341330 | HR-TB | None | ERR2517475 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR1023509 | Other | None | ERR4819933 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | ERR2693231 | Other | None | SRR6045450 | Other | lineage4.9 | None | ERR2693230 | Other | None | SRR5535933 | HR-TB | None | ERR2693257 | Other | None | ERR2693254 | Other | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6045519 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045399 | Other | None | SRR6046362 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046397 | Other | None | SRR6046482 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046460 | HR-TB | None | ERR4830353 | Other | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR11466062 | Sensitive | lineage4.9.1 | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4831638 | Sensitive | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6789626 | Other | None | ERR502524 | HR-TB | La2 | None | ERR323036 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR5311081 | HR-TB | None | ERR502943 | HR-TB | None | ERR5311099 | HR-TB | None | ERR502889 | Other | None | ERR323038 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR7496471 | Sensitive | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7585435 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323045 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR323107 | Other | lineage4 | None | ERR1034652 | Other | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR1063896 | Sensitive | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1035122 | Sensitive | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR10796569 | Other | lineage4.9 | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283014 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3797043 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797061 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797086 | Other | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR400336 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR400345 | Other | lineage4 | None | ERR4188350 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4188247 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769521 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798099 | Other | None | ERR4797313 | HR-TB | None | ERR4797474 | Other | None | ERR4798406 | HR-TB | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798504 | Other | lineage3 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811030 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4812155 | Sensitive | None | ERR6358837 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6359066 | HR-TB | lineage4 | None | ERR736874 | HR-TB | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR6866639 | Other | None | ERR6866807 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736865 | HR-TB | None | ERR8976043 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119669 | HR-TB | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786671 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786604 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None |
|---|
