Rv0667 - c.654G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
90 Sensitive
7 RR-TB
32 HR-TB
10 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
45 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage4.9 | 111 |
| 3 | |
| lineage2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.1.2.1 | 3 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.1 | 1 |
| lineage4.6.2.2 | 3 |
| lineage4.3.4.2 | 1 |
| lineage4.2.1 | 2 |
| lineage2.2.1 | 11 |
| lineage4.3.4.1 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage2.2 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.9.1 | 1 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage5.1.4 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.4.1.1.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.8 | 3 |
| lineage1.2.1.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.3 | 2 |
| La1.8.1 | 2 |
| lineage3 | 2 |
| lineage4 | 7 |
| lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage3.1.3 | 1 |
| lineage1.1.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 186 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR736837 | Pre-XDR-TB | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR29096246 | Sensitive | La1.7;lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6044835 | Other | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | ERR369156 | Sensitive | lineage4.9 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR11252736 | Other | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR3797019 | Other | La1.8.1 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR11465665 | Other | lineage4.1.1.3 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR2517475 | Other | lineage4 | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819241 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR1181403 | Other | lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | ERR3275450 | Other | lineage4 | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR502481 | RR-TB | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR6358979 | Other | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR502473 | RR-TB | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR11462861 | Other | La1.8.1 | None | SRR11444077 | Sensitive | lineage4.6.2.2 | None | SRR1183054 | Sensitive | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1181256 | Other | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None |
|---|
