Rv3596c - c.237G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
36 Sensitive
2 RR-TB
25 HR-TB
5 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 55 |
| lineage4.8 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.2 | 1 |
| lineage3 | 2 |
| lineage2.2.1 | 9 |
| La1.7;lineage4.9 | 3 |
| lineage4.3.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8.1 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.8;lineage4.9 | 2 |
| lineage1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.8.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.4.1.1.1 | 1 |
| 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 98 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046046 | Other | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR736848 | Other | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR4816964 | Sensitive | lineage4.9 | None | DRR188519 | Other | lineage4.4.2 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR4819933 | Sensitive | lineage4.9 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR363502 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR9971112 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR2693252 | Sensitive | lineage4.9 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR4815471 | Sensitive | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR2660539 | Other | lineage4.9 | None | ERR6359069 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | SRR20970016 | Other | lineage2.2.1 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR6866639 | Other | lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR1063896 | Sensitive | None | ERR369151 | Other | lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR6045053 | Other | lineage4 | None |
|---|
