Rv3596c - c.219G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
31 Sensitive
3 RR-TB
26 HR-TB
8 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 42 |
| lineage1.1.1 | 1 |
| lineage2.2.1 | 4 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage2.2.1;lineage4 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.9;lineage9 | 2 |
| La1.6;La3;lineage4.9 | 1 |
| La3;lineage4.9 | 5 |
| lineage4.1.1.2 | 1 |
| lineage3.1.2.2 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1;lineage4.9 | 3 |
| La2;lineage4.9;lineage9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage2.2.1.1 | 3 |
| lineage4.1.2 | 1 |
| La1.2 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| 5 | |
| La1.7;lineage4.9 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3 | 4 |
| lineage4 | 2 |
| lineage4.1.2.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage4.2;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage6.1.1 | 2 |
| lineage1.1.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 116 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29096410 | Other | lineage4.9 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1180319 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR23961549 | Other | La1.2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR9786843 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4798823 | HR-TB | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR4819462 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR4818561 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR990545 | Other | lineage3 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4 | None | ERR6358951 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR2514692 | Other | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR4818536 | Other | lineage4.9 | None |
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