Rv1908c - c.396T>C
Drug resistance types
11 Sensitive
5 RR-TB
186 HR-TB
34 MDR-TB
40 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 43 |
| lineage4.1.2.1 | 9 |
| 104 | |
| lineage4.9 | 36 |
| lineage4 | 28 |
| lineage2.2 | 28 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 2 |
| lineage2.2.2 | 21 |
| lineage3.1.2.2;lineage3.1.2.1 | 1 |
| lineage4.8 | 7 |
| lineage4.4.2 | 5 |
| lineage3 | 7 |
| lineage2.2.1.1 | 3 |
| lineage4;lineage2.2.2 | 1 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage4.5 | 5 |
| lineage4.9;lineage2 | 1 |
| La3 | 1 |
| lineage1.1.2 | 2 |
| La1.7.1 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4.1 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage2.1 | 1 |
| lineage1.1.1 | 1 |
| lineage1.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage3.1 | 2 |
| La2 | 1 |
| lineage4.6.1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4;lineage3.1 | 1 |
| lineage3.1.2 | 1 |
| La1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 329 |
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR736839 | Other | None | ERR736835 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR736865 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9891974 | Sensitive | lineage4.8 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013599 | HR-TB | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013598 | HR-TB | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013617 | MDR-TB | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013618 | MDR-TB | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048885 | MDR-TB | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | None | SRR1048983 | HR-TB | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049041 | MDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1172310 | HR-TB | None | SRR1169306 | Other | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1174291 | HR-TB | lineage1.1.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837703 | Sensitive | lineage4.9 | None | SRR13861399 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR19303813 | HR-TB | lineage4.8 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR8692790 | RR-TB | lineage4 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675486 | HR-TB | None | SRR3675234 | Other | None | SRR3675501 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176751 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675545 | HR-TB | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675510 | Other | None | ERR4816151 | Other | lineage4.8 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR212001 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675550 | Other | None | SRR3675558 | HR-TB | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR2229159 | Sensitive | lineage4.8 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR212121 | HR-TB | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816548 | MDR-TB | lineage4.5 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | ERR1034791 | RR-TB | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | ERR4818710 | Sensitive | lineage4.9 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818561 | HR-TB | lineage4 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818929 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341418 | Other | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SAMN02598978 | HR-TB | lineage1.1.2 | None | ERR1035138 | MDR-TB | None | SRR5341293 | HR-TB | lineage4 | None | ERR2515807 | Sensitive | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341313 | HR-TB | None | SAMN02360585 | HR-TB | lineage4.5 | None | ERR4819933 | Other | lineage4.9 | None | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | SRR5341470 | HR-TB | None | ERR2693257 | Other | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045519 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045233 | HR-TB | None | ERR4830353 | Other | None | SRR6325442 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046395 | HR-TB | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR294248 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6855916 | Sensitive | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7535077 | MDR-TB | lineage4.6.1.2 | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | SRR7535080 | HR-TB | lineage4.8 | None | ERR323041 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323053 | HR-TB | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR067681 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1063857 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR133986 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3468622 | HR-TB | lineage4.9 | None | ERR3797017 | Other | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797083 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4187652 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR4596902 | HR-TB | lineage3 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4798262 | HR-TB | La1 | None |
|---|
