lineage | Count |
---|---|
lineage4.9 | 15 |
lineage4.8 | 2 |
18 | |
lineage2.2.2 | 19 |
lineage4 | 13 |
lineage3 | 5 |
lineage2.2.1 | 34 |
lineage2.2.2;lineage2.2.1 | 2 |
lineage4.4.2 | 5 |
lineage1.1.1 | 1 |
lineage4.5 | 3 |
lineage2.2.1.1 | 2 |
lineage4.9;lineage4.2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.8.1 | 1 |
lineage4.7 | 1 |
lineage2.2 | 23 |
lineage4;lineage2.2.2 | 1 |
lineage4.9;lineage2 | 1 |
spoligotype | Count |
---|---|
None | 148 |
ID | Drug resistance | Lineage | Country iso2 | SRR1173185 | HR-TB | lineage4.9 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR19303813 | HR-TB | lineage4.8 | None | SRR3675456 | HR-TB | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SRR3675555 | HR-TB | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | ERR1023509 | Other | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6044897 | Sensitive | lineage4.9 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR1034634 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3445501 | HR-TB | None | SRR6046395 | HR-TB | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR387051 | HR-TB | None | ERR4596910 | Sensitive | lineage4 | None | ERR4798823 | HR-TB | lineage4 | None | ERR5918097 | Sensitive | lineage4.8.1 | za | ERR5987263 | MDR-TB | lineage2.2.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR736856 | HR-TB | lineage4 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013566 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013565 | Pre-XDR-TB | lineage4.4.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013595 | HR-TB | lineage3 | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013598 | HR-TB | None | SRR1013599 | HR-TB | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013614 | HR-TB | lineage2.2 | None | SRR1013617 | MDR-TB | None | SRR1013612 | HR-TB | lineage4 | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013622 | Pre-XDR-TB | lineage2.2 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013618 | MDR-TB | None | SRR1013634 | MDR-TB | lineage2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048853 | Pre-XDR-TB | lineage4;lineage2.2.2 | None | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048885 | MDR-TB | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | None | SRR1048980 | HR-TB | lineage3 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048983 | HR-TB | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049022 | HR-TB | lineage4.9;lineage2 | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1049041 | MDR-TB | None |
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