Rv0006 - c.897T>C
Drug resistance types
24 Sensitive
44 RR-TB
106 HR-TB
137 MDR-TB
6 Pre-XDR-TB
3 XDR-TB
235 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage4.1.2.1 | 15 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage4.9 | 140 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| La1.7;lineage4.9 | 10 |
| M.canetti;lineage4.2 | 1 |
| lineage1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 26 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| M.canetti;lineage2.2 | 3 |
| lineage4.6.2.2 | 3 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.1.1.1 | 2 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 24 | |
| lineage2.1;lineage4.9 | 19 |
| lineage1.1.2;lineage4 | 1 |
| lineage3 | 4 |
| lineage2.2 | 3 |
| La3;lineage4.8 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La1.2 | 1 |
| lineage4.2;lineage4.9 | 3 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti | 56 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La3;lineage4.9 | 9 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.8 | 3 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 17 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 5 |
| La1.7;lineage4.9;lineage7 | 3 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| La2;lineage4.9 | 2 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage1.1.2 | 2 |
| lineage4.1.3 | 2 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage6.3 | 8 |
| lineage2.2.2 | 2 |
| lineage4 | 4 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.3.3 | 4 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 5 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage6.3.1 | 1 |
| La2;lineage2.2 | 1 |
| La3;lineage1.1.2 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.3.2.1 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| La1.8.1 | 3 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage3.1 | 1 |
| lineage4.9;lineage9 | 2 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage3.1.1 | 1 |
| lineage4.9;lineage7 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage1.2.1.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.1.2.1.1 | 1 |
| La3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| La1.7 | 1 |
| lineage2.1 | 2 |
| M.canetti;lineage2.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.8.1 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage1.1.3.1 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| lineage4.3.4 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 555 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675243 | MDR-TB | lineage4.9 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3283021 | MDR-TB | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR349266 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR7496509 | Other | None | ERR9786843 | Other | None | SRR1640750 | RR-TB | None | SRR1184372 | MDR-TB | None | SRR18213713 | HR-TB | None | ERR987722 | MDR-TB | None | ERR4407463 | HR-TB | None | SRR28119777 | Other | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4817692 | MDR-TB | lineage1.1.2;lineage4 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR779852 | HR-TB | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | SRR24061600 | Other | M.canetti | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1173355 | Other | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR1169194 | Other | lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR266123 | Other | M.canetti | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4815361 | Other | M.canetti | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675482 | RR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR1196677 | Other | lineage2.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR990545 | RR-TB | lineage3 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR4819927 | Other | M.canetti | None | SRR5341313 | Other | La1.7;lineage4.9;lineage7 | None | SRR10177259 | Other | M.canetti | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR4821046 | Other | M.canetti | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR3597002 | Other | M.canetti | None | SRR1173778 | Other | lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5818668 | Other | M.canetti | dj | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR313116 | Other | M.canetti | None | ERR363426 | Sensitive | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR5818614 | Other | M.canetti | dj | ERR4821655 | HR-TB | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR313117 | Other | M.canetti | None | ERR4816019 | Other | M.canetti | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6511621 | HR-TB | lineage4.9 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR069989 | HR-TB | lineage2.2.2 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR3675585 | HR-TB | lineage4.9 | None | ERR1035162 | MDR-TB | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR10177262 | Other | M.canetti | None | SRR3675221 | Other | lineage4.9 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311079 | MDR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4813861 | Other | lineage4.3.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR10177261 | Other | M.canetti | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675572 | Other | None | ERR9786671 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR234659 | HR-TB | None | ERR2514692 | Other | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR25827682 | Other | None | SRR1172857 | Other | None | SRR7496517 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4872096 | MDR-TB | lineage4.6.2.2 | None | ERR4798099 | HR-TB | lineage4.9 | None | ERR363499 | Other | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR5818567 | Other | M.canetti | dj | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR266109 | Other | M.canetti | None | ERR266107 | Other | M.canetti | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR3597001 | Other | M.canetti | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4821053 | RR-TB | lineage3 | None | ERR552304 | Other | M.canetti | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR926165 | Other | lineage4.9 | None | SRR3675390 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR266110 | Other | M.canetti | None | ERR3283044 | Other | lineage4 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR552307 | Other | M.canetti | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR313113 | Other | M.canetti | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR266120 | Other | M.canetti | None | ERR176643 | Other | La3;lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR24061599 | Other | M.canetti | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR313115 | Other | M.canetti | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1173118 | Other | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173400 | Other | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR10177263 | Other | M.canetti | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | SRR5818653 | Other | M.canetti | dj | ERR4815441 | HR-TB | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR323062 | HR-TB | lineage4.9 | None | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR9786525 | RR-TB | lineage4.1;lineage4.8 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR1172951 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR16058674 | Other | M.canetti | None | SRR12006550 | Other | lineage1.2.1.2 | None | ERR4796254 | Other | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR313114 | Other | M.canetti | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341432 | Other | La1.7;lineage4.9;lineage7 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR9125475 | Other | M.canetti | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR13423544 | Other | lineage4.5 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR1172728 | RR-TB | La3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341418 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR10177258 | Other | M.canetti | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR9119502 | MDR-TB | lineage4.6.2.2 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675222 | Other | La1.7 | None | SRR10808730 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR7451301 | Other | M.canetti | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4188322 | Other | lineage4.6.4;lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | SRR6044815 | RR-TB | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR5818661 | Other | M.canetti | dj | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675246 | Other | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR363453 | Other | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1172234 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | ERR551056 | Other | M.canetti | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1162864 | MDR-TB | lineage4.1.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR5818676 | Other | M.canetti | dj | ERR3797046 | HR-TB | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | SRR6650709 | Other | M.canetti | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR3468607 | RR-TB | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR266108 | Other | M.canetti | None | ERR502889 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675311 | Other | lineage4.9 | None | SRR5818605 | Other | M.canetti | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | SRR7240492 | MDR-TB | La1.7.1 | None | ERR7451300 | Sensitive | M.canetti | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR133986 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR971389 | Other | lineage4.9 | None | SRR22179528 | Other | M.canetti | None | SRR13861241 | HR-TB | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28170812 | Other | M.canetti | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | ERR1063896 | HR-TB | None | ERR9786604 | Other | None | ERR4815604 | Other | None | ERR9117709 | Other | None | SRR6789626 | Other | None | ERR11252736 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | SRR3675236 | Other | None | SRR18289196 | Other | M.canetti | None | ERR4816999 | Other | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR137286 | Other | lineage4.9 | None | ERR266106 | Other | M.canetti | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR363449 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR3597003 | Other | M.canetti | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR3675507 | RR-TB | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR3675549 | Other | lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR3439432 | RR-TB | M.canetti;lineage4.6.4;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR16058668 | Other | M.canetti | None | ERR3797083 | RR-TB | lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6866639 | HR-TB | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | ERR3597005 | Other | M.canetti | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR3675487 | MDR-TB | M.canetti;lineage4.9 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR551055 | Other | M.canetti | None | SRR3675269 | RR-TB | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675446 | RR-TB | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5818652 | Other | M.canetti | dj | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR9125480 | Other | M.canetti | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR5341308 | HR-TB | lineage4.9 | None | ERR551057 | Other | M.canetti | None | ERR3797063 | Other | La3;lineage4.9 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR3597007 | Other | M.canetti | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR552305 | Other | M.canetti | None | ERR736875 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR4817181 | Other | M.canetti | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR5818685 | Other | M.canetti | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR926164 | Other | lineage4.9 | None | SRR24061598 | Other | M.canetti | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR10177260 | Other | M.canetti | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None |
|---|
