Rv0006 - c.-524C>T
Drug resistance types
13 Sensitive
3 RR-TB
97 HR-TB
12 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
53 Other
lineage Counts
| lineage | Count |
|---|---|
| 84 | |
| lineage4.6.2.2 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage2.2.1 | 8 |
| lineage3.1 | 2 |
| lineage4.1.2.1 | 12 |
| lineage4.3.4.1 | 1 |
| lineage4.9 | 28 |
| lineage4 | 10 |
| La1.8.1 | 3 |
| lineage4.3.3 | 2 |
| lineage4.3.4 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.5 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage2 | 1 |
| lineage4.4.1.1 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.1 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage2.1 | 1 |
| lineage3 | 2 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1;lineage1 | 1 |
| lineage4.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 181 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4831117 | HR-TB | None | ERR323036 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR294248 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323041 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR1034652 | Other | None | ERR1063862 | HR-TB | None | ERR3283025 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR4188350 | HR-TB | None | ERR3797061 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR4187669 | Other | La1.8.1 | None | ERR4769452 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769450 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4811493 | HR-TB | None | ERR6358991 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6359045 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119669 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR9634265 | Sensitive | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861432 | Sensitive | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675486 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4814976 | Other | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675558 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212034 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816322 | Other | lineage4.9 | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816470 | Other | lineage3 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816852 | Other | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR2229143 | Other | lineage4.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514692 | Other | None | SRR5341330 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2514929 | HR-TB | lineage1.1.2 | None | ERR2693231 | Other | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693257 | Other | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6045053 | Other | None | ERR2693232 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6046015 | Other | lineage4.9 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046046 | Other | None | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046397 | Other | None | SRR6046492 | Other | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6325442 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None |
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