Rv0005 - c.1585C>T
Drug resistance types
39 Sensitive
32 RR-TB
16 HR-TB
105 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
73 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 90 |
| lineage6.1.3 | 1 |
| lineage4.1.2.1 | 11 |
| M.canetti;lineage2.1;lineage4.9 | 24 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage4 | 6 |
| lineage4.3.3 | 3 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage1.1.3.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.4.1.1 | 3 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La1.7;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.9;lineage7 | 2 |
| La1.8.1 | 2 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La2;lineage4.9 | 2 |
| lineage2.1;lineage4.9 | 6 |
| lineage2.1;lineage4.3.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage2.2 | 2 |
| lineage4.3.4 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage3 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage2.2.1 | 8 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.1.2.1.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage4.1;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La1.7.1 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage5.1.4 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| 2 | |
| La3;M.canetti;lineage4.9 | 2 |
| lineage1.1.2;lineage4 | 1 |
| lineage4.6.4 | 2 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage1;lineage4.9 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 266 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6044819 | Sensitive | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR363500 | Other | lineage4.9 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR2026697 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | ERR349266 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1173453 | Other | lineage4.4.1.1 | None | ERR363421 | Other | lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR1791696 | RR-TB | La1.8.1 | None | ERR2026698 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR363490 | Other | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR373947 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675260 | Sensitive | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR363479 | Other | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR363499 | Other | lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5162090 | RR-TB | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR4821053 | RR-TB | lineage3 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR926156 | Other | lineage4.9 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR349265 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR3675582 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR11465151 | Sensitive | lineage4.3.4.1 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8665994 | RR-TB | lineage4.9 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR1162864 | MDR-TB | lineage4.1.2.1 | None | ERR363447 | Other | lineage4.9 | None | SRR3675494 | RR-TB | lineage4.9 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR3468607 | RR-TB | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR1510066 | RR-TB | lineage1.2.1.2.1 | None | SRR3675243 | MDR-TB | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR7240492 | MDR-TB | La1.7.1 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR6045503 | Other | lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR369159 | Other | lineage4.9 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR971389 | Other | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | SRR1640750 | RR-TB | None | SRR12708416 | Sensitive | None | ERR349300 | Other | lineage4.9 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4817692 | MDR-TB | lineage1.1.2;lineage4 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6046385 | Sensitive | lineage4.9 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | SRR3675507 | RR-TB | lineage4.9 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | ERR369158 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR4178309 | Other | lineage4.1.2.1 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | ERR369163 | Other | lineage4.9 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | SRR1166821 | RR-TB | lineage4.1.2.1 | None | ERR349264 | Other | lineage4.9 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR21732348 | Sensitive | lineage3 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR13423544 | Other | lineage4.5 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR6044815 | RR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None |
|---|
