Rv0006 - c.-596G>A


Drug resistance types
120 Sensitive 5 RR-TB 92 HR-TB 14 MDR-TB 3 Pre-XDR-TB 0 XDR-TB 76 Other
lineage Counts
lineage Count
lineage4.9 51
88
La1.8.1 2
lineage2.2.1 16
lineage2.2 3
lineage4.1 3
lineage4.9;lineage4.6.3 1
lineage4.1.1.3 2
lineage4 86
lineage4.9;lineage4.8.1;lineage4.1.1 1
lineage4.3.4.2.1 2
lineage3;lineage2.1 1
lineage2.1 1
lineage1.2.1.1 1
lineage4.3 1
lineage4.1.1 2
lineage4.1.2.1 10
lineage4;lineage1.1.2 1
lineage3 2
lineage4.1.1.2 1
lineage4.2.1 3
lineage5.1.4 1
lineage4.3.2.1 2
lineage1.1.2 3
lineage4.9;lineage2.1 1
lineage1.1 1
lineage4.6.2.2 2
lineage3.1 2
La2 1
lineage4.1.2 2
La1.2 1
lineage3.1.2 1
lineage4.5 2
lineage4.3.3 2
lineage1.1.3.1 1
lineage4.3.2 1
lineage4.8;lineage4.1 2
lineage3.1.2.2;lineage3.1.2.1 1
lineage6.1.3 1
La3 1
lineage2.2.1.1 3
lineage1.2.1.2.1 1
spoligotype Counts
spoligotype Count
None 310
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR16157123 Other lineage4.9 None
SRR1640750 HR-TB None
SRR19295647 Sensitive lineage4.9 None
SRR1791696 Other La1.8.1 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR20969708 HR-TB lineage2.2 None
SRR12708416 Sensitive lineage4.1 None
SRR3675482 HR-TB None
SRR26159047 Other lineage4.9;lineage4.6.3 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR1035239 HR-TB None
SRR26937107 MDR-TB lineage2.2.1 None
SRR3675473 Sensitive lineage4.9 None
SRR3675472 Sensitive lineage4.9 None
SRR3675464 HR-TB lineage4.1 None
SRR3675477 Other lineage4.9 None
SRR6325445 HR-TB None
ERR4815296 Sensitive lineage4 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None
ERR161034 Other lineage4.3.4.2.1 None
ERR161033 HR-TB None
SRR3675486 HR-TB None
SRR3675210 Sensitive lineage4.9 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
SRR3675209 Sensitive lineage4.9 None
ERR3275450 Other lineage4 None
SRR3675249 Sensitive lineage4.9 None
ERR702405 Sensitive lineage2.1 None
SRR3675246 Sensitive lineage4 None
SRR3675229 Other lineage4 None
ERR4814734 Other lineage1.2.1.1 None
SRR3675265 Other lineage4 None
SRR3675266 Sensitive lineage4.9 None
SRR3675247 Other lineage4.9 None
ERR176568 Other lineage4.3 None
SRR3675383 HR-TB None
SRR3675279 Other None
SRR3675292 Sensitive lineage4 None
SRR3675318 Other lineage4.9 None
ERR176643 HR-TB None
SRR3675312 HR-TB lineage4 None
SRR3675541 Sensitive lineage4.9 None
SRR3675387 Sensitive None
ERR176740 HR-TB None
SRR3675522 Other None
ERR176751 HR-TB None
SRR3675455 Sensitive lineage4 None
SRR3675514 Sensitive lineage4.9 None
SRR3675542 Other lineage4.9 None
SRR3675547 Other lineage4.9 None
SRR3675553 Sensitive lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
ERR4816113 Sensitive lineage4.1.1 None
SRR3675545 HR-TB None
ERR212001 HR-TB None
SRR3675558 HR-TB None
ERR212033 HR-TB None
SRR3675577 Sensitive lineage4.9 None
SRR3675571 HR-TB None
SRR3675583 Sensitive None
ERR4816656 HR-TB None
ERR4816551 HR-TB lineage4.1.1.3 None
SRR5341384 Sensitive lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR4816734 Sensitive lineage4.9 None
ERR4817692 HR-TB lineage4;lineage1.1.2 None
ERR3275196 Other lineage2.2.1 nl
ERR4817998 Other lineage3 None
ERR4818252 Other lineage4.1.1.2 None
ERR2229143 Other lineage4.1.1 None
ERR2512770 Other lineage4.2.1 None
ERR4818929 HR-TB None
ERR2513283 Other lineage5.1.4 None
ERR2513724 Sensitive lineage4.3.2.1 None
SRR5341453 Sensitive None
SRR5341425 Other lineage4 None
SRR5341396 Other lineage4 None
SRR5341298 Sensitive lineage4 None
SRR5341437 Sensitive lineage4.9 None
SRR5341296 Sensitive lineage4.9 None
ERR2514552 Sensitive lineage3 None
SRR5341299 Sensitive lineage4 None
SRR5341308 Sensitive lineage4 None
SRR5341303 RR-TB lineage4 None
ERR2446382 Other lineage4 None
SRR5341323 Sensitive lineage4 None
ERR2514929 HR-TB lineage1.1.2 None
ERR6359082 Other lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
SRR5341467 Other lineage4 None
ERR2693238 HR-TB lineage4.9 None
ERR2446563 Other lineage2.2.1 nl
SRR5341470 HR-TB None
ERR2517475 Other lineage4 None
SRR5341469 Other lineage4 None
ERR2693239 HR-TB None
SRR6045503 HR-TB None
ERR502511 Sensitive lineage4.9;lineage2.1 None
ERR278594 HR-TB None
SRR5535933 HR-TB None
SRR6044819 Sensitive lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR2693227 Other lineage4.9 None
ERR4821655 Sensitive lineage4 None
SRR6045706 Sensitive lineage4 None
SRR6045892 Sensitive None
SRR6325448 HR-TB None
SRR6045952 HR-TB None
SRR6045371 Sensitive lineage4.2.1 None
SRR6046259 Sensitive lineage4.9 None
SRR6046015 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6325444 HR-TB None
SRR6046514 HR-TB None
SRR6325447 HR-TB None
SRR6046611 HR-TB lineage4.9 None
SRR6397654 HR-TB lineage4.1.2.1 None
SRR6046802 Other lineage4 None
SRR6046897 Sensitive lineage4 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6046863 Sensitive lineage1.1.2 None
SRR6511621 HR-TB None
ERR3077978 Other lineage1.1 None
SRR6325442 HR-TB None
ERR294266 HR-TB None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4831638 Sensitive None
ERR323034 HR-TB lineage3.1 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR294248 HR-TB None
SRR6789624 MDR-TB lineage4.1 None
ERR323036 HR-TB None
ERR502943 HR-TB None
ERR502510 Sensitive lineage4 None
ERR502524 HR-TB La2 None
SRR9970978 Sensitive lineage4.1.2 None
ERR5311099 HR-TB None
ERR5311081 HR-TB None
ERR323038 HR-TB None
ERR5311090 HR-TB None
SRR9970980 Other lineage4.1.2 None
ERR323053 HR-TB None
ERR323041 HR-TB None
ERR323055 HR-TB None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR9971114 Other lineage2.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323039 HR-TB None
ERR323063 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323108 HR-TB lineage4 None
ERR1034652 Other None
ERR323085 Sensitive lineage4 None
ERR067699 HR-TB lineage4 None
ERR323066 Sensitive lineage4 None
ERR323107 Other lineage4 None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1035122 Sensitive None
ERR1063862 HR-TB None
ERR1063883 Sensitive lineage4 None
ERR1063896 Sensitive None
ERR108471 HR-TB lineage4 None
ERR133825 Sensitive lineage4 None
ERR137286 Sensitive lineage4 None
ERR3283048 HR-TB lineage4.9 None
ERR323115 Sensitive lineage4 None
ERR3273109 MDR-TB lineage4 None
ERR3283017 HR-TB None
ERR349265 Sensitive lineage4 None
ERR3283055 HR-TB None
ERR3468544 HR-TB None
ERR349264 Sensitive lineage4 None
ERR349298 Sensitive lineage4 None
ERR349266 Sensitive lineage4.9 None
ERR363437 Sensitive lineage4 None
ERR349296 Sensitive lineage4 None
ERR349330 Sensitive lineage4 None
ERR349299 Sensitive lineage4 None
ERR349300 Sensitive lineage4.9 None
ERR363421 Sensitive lineage4 None
ERR363426 Sensitive lineage4 None
ERR363446 Sensitive lineage4 None
ERR363447 Sensitive lineage4 None
ERR363445 Sensitive lineage4 None
ERR363453 Sensitive lineage4 None
ERR363449 Sensitive lineage4 None
ERR363499 Sensitive lineage4 None
ERR363456 Sensitive lineage4 None
ERR363474 Sensitive lineage4 None
ERR363479 Sensitive lineage4 None
ERR363490 Sensitive lineage4 None
ERR363498 Sensitive lineage4 None
ERR363500 Sensitive lineage4 None
ERR363502 Sensitive lineage4 None
ERR363506 Sensitive lineage4 None
ERR363509 Sensitive lineage4 None
ERR369156 Sensitive lineage4.9 None
ERR369151 Sensitive lineage4.9 None
ERR369159 Sensitive lineage4 None
ERR369157 Sensitive lineage4.9 None
ERR369158 Sensitive lineage4 None
ERR400326 Sensitive lineage4 None
ERR369162 Sensitive lineage4 None
ERR373945 HR-TB lineage4 None
ERR373946 Sensitive lineage4 None
ERR373947 Sensitive lineage4 None
ERR3797016 HR-TB None
ERR3797083 HR-TB None
ERR400320 Sensitive lineage4 None
ERR369160 Sensitive lineage4.9 None
ERR369163 Sensitive lineage4 None
ERR3797023 HR-TB La1.8.1 None
ERR3797046 HR-TB None
ERR4178226 Sensitive lineage4 None
ERR400336 Sensitive lineage4 None
ERR400345 Other lineage4 None
ERR4024991 Other None
ERR4178309 Other lineage4.1.2.1 None
ERR4188350 HR-TB None
ERR4769497 HR-TB La1.2 None
ERR4769457 Other lineage4.9 None
ERR4797264 Sensitive None
ERR4796254 Sensitive lineage4 None
ERR4796929 Sensitive lineage4 None
ERR4797184 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797474 Other None
ERR4797313 HR-TB None
ERR4797350 Sensitive lineage4.9 None
ERR4798099 Other None
ERR4798431 HR-TB None
ERR4798648 HR-TB lineage3.1.2 None
ERR4799513 HR-TB lineage2.2 None
ERR4799378 Sensitive lineage4 None
ERR4799025 Pre-XDR-TB None
ERR4812155 Sensitive None
ERR4811031 Sensitive lineage4.5 None
ERR4811030 Sensitive None
ERR6358837 HR-TB None
ERR5908228 Other lineage4.3.3 None
ERR6866410 Sensitive None
ERR6359045 HR-TB None
ERR6865502 Sensitive lineage4 None
ERR6865513 Other lineage4.1.2.1 None
ERR6866022 Other None
ERR6358979 Other None
ERR736856 HR-TB lineage4 None
ERR736839 Other None
ERR6866547 Sensitive lineage4 None
ERR6866639 Other None
ERR736834 Sensitive lineage4 None
ERR736872 Sensitive lineage4 None
ERR736865 HR-TB None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR751326 Sensitive lineage4 None
ERR752229 Other lineage4.5 None
ERR8158096 HR-TB lineage2.2.1 None
ERR772255 MDR-TB lineage4.3.2 None
ERR8976043 HR-TB None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9119096 Other lineage4.3.3 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9634265 Sensitive None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR987729 HR-TB lineage3.1.2.2;lineage3.1.2.1 None
ERR9786843 Other None
ERR987722 HR-TB None
ERR9787153 Other lineage6.1.3 None
SRR10809074 Sensitive lineage4 None
SRR10808805 Sensitive None
SRR1172146 Sensitive lineage4.9 None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1167384 Other lineage4 None
SRR1169306 Other None
SRR1158918 Sensitive lineage4 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1169249 Other La3 None
SRR1172310 HR-TB None
SRR1172214 HR-TB lineage4.9 None
SRR1173788 Other None
SRR1181091 Other lineage2.2.1.1 None
SRR1175500 MDR-TB lineage4 None
SRR1175507 MDR-TB lineage4 None
SRR1175508 Other lineage4.9 None
SRR1180137 Other lineage2.2.1 None
SRR1181020 Other lineage2.2.1 None
SRR1174897 HR-TB None
SRR1175496 HR-TB lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR1180172 Other lineage2.2.1 None
SRR1181289 Other lineage2.2.1 None
SRR1181328 Other lineage2.2.1 None
SRR1183144 Other lineage2.2.1 None
SRR1183049 Other lineage2.2 None
SRR1183106 Other lineage2.2.1.1 None
SRR1183965 Sensitive lineage4.9 None
SRR13861146 Sensitive lineage4.9 None
SRR13861305 Other lineage4.9 None
SRR13861324 Other lineage4.9 None
SRR14782405 HR-TB None
SRR13861434 RR-TB lineage4.9 None
SRR13861500 RR-TB lineage4.9 None
SRR13861484 RR-TB lineage4.9 None
SRR14801749 Sensitive None
SRR14802079 MDR-TB lineage4.2.1 None
SRR1510066 Other lineage1.2.1.2.1 None