Rv0001 - c.805_807delTTGinsCC


Drug resistance types
31 Sensitive 5 RR-TB 48 HR-TB 26 MDR-TB 1 Pre-XDR-TB 1 XDR-TB 106 Other
lineage Counts
lineage Count
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.9 68
lineage4 7
lineage2.1;lineage4.9 12
lineage4.1.2.1 3
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.9;lineage6.3 5
10
lineage3.1;lineage9 1
lineage2.2.1 11
lineage2.1;lineage6.3 2
lineage1.1.2 1
lineage2.1;lineage4.9;lineage6.3 9
lineage2.2.2 1
La3;lineage4.9 8
La3;lineage1.1.2 1
M.canetti;lineage4.2;lineage4.9 1
lineage2.1 3
La1.7;lineage4.9;lineage7 1
M.canetti;lineage4.6.4;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage4.1.3 2
lineage3 3
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3 1
lineage4.6.4;lineage4.9 1
M.canetti;lineage2.1;lineage4.9 2
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage4.1;lineage4.9 1
La1.7;lineage4.9 4
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage1.1.1;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage2.2 2
lineage1.1.3.1 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.1.2 1
lineage4.2.1 1
lineage2.2.1;lineage6.3 1
lineage1;lineage4.9 1
lineage4.1.1.1 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.4.1.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9 1
lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage4.2 1
lineage3;lineage4.9 1
lineage4.1.1.3;lineage4.9 2
lineage5.1.4 1
La3;lineage2.1;lineage6.3 1
lineage4.2.1.1;lineage4.3.3 1
La3;lineage4.8 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
La3;lineage2.1;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage4 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4.3.4.2.1 1
lineage4.5 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.3.2.1 1
lineage4.9;lineage7 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
spoligotype Counts
spoligotype Count
None 218
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675311 Other lineage4.9 None
ERR2446382 Other lineage4 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR2514692 Other None
ERR9787197 Other None
SRR3675236 Other None
SRR28119805 Other lineage4.9 None
SRR12708416 Sensitive None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR3675275 Other lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR1175496 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
ERR702406 Other lineage2.1 None
ERR3283031 Other La3;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR1184312 Other lineage2.2.1 None
SRR3675586 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR5341345 Sensitive lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR400345 Other lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR3283011 Other La3;lineage4.9 None
SRR3675248 Other lineage4.9 None
ERR2514552 Sensitive lineage3 None
SRR5341323 Sensitive lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR12708384 Sensitive lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR1172728 RR-TB La3 None
SRR5341296 Sensitive lineage4.9 None
ERR4188322 Other lineage4.6.4;lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR1196546 Other lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4797588 MDR-TB lineage3 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR4769450 Other lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
ERR4819241 Other lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283021 MDR-TB lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR20970016 Other lineage2.2 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
ERR9786604 Other None
ERR9117709 Other None
SRR6789626 Other None
SRR18213713 HR-TB None
ERR4797264 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR400320 Sensitive lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR3675270 Other lineage4.9 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR9970980 HR-TB lineage4.1.2 None
SRR20969708 HR-TB lineage2.2 None
ERR3797048 Other La3;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR20969731 Other lineage2.2.1 None
ERR3283044 Other lineage4 None
ERR2512770 Sensitive lineage4.2.1 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675548 Sensitive lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
SRR3675580 Sensitive lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR3675585 HR-TB lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR4816478 HR-TB lineage4 None
SRR3675541 Sensitive lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR19295647 HR-TB lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR2517475 Other lineage4 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR5341396 Other lineage3;lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR2513283 Sensitive lineage5.1.4 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR6045053 Other lineage4 None
SRR7496509 Other None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR9971114 Other lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6046046 Other lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR3275450 Other lineage4 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR6046878 Other lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR4817896 HR-TB lineage2.2.1 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4820773 HR-TB lineage4.9 None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR6046564 Sensitive lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6045555 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR15368973 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR6046133 HR-TB lineage4.9 None
SRR6046593 Other lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
ERR4811031 Other lineage4.5 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR400336 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR400326 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR1165699 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4812155 Other lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR4819781 Other lineage2.2.1 None
ERR3797047 MDR-TB lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None